Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCLNP1 (OCLN pseudogene 1)

Identity

Alias (NCBI)-
HGNC (Hugo) OCLNP1
LocusID (NCBI) 647859
Atlas_Id 80510
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 71074203 and ends at 71093070 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)OCLNP1   53916
Cards
Entrez_Gene (NCBI)OCLNP1    OCLN pseudogene 1
Aliases
GeneCards (Weizmann)OCLNP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:71074203-71093070 [Contig_View]  OCLNP1 [Vega]
TCGA cBioPortalOCLNP1
AceView (NCBI)OCLNP1
Genatlas (Paris)OCLNP1
SOURCE (Princeton)OCLNP1
Genetics Home Reference (NIH)OCLNP1
Genomic and cartography
GoldenPath hg38 (UCSC)OCLNP1  -     chr5:71074203-71093070 -  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCLNP1  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathOCLNP1 - 5q13.2 [CytoView hg19]  OCLNP1 - 5q13.2 [CytoView hg38]
Genome Data Viewer NCBIOCLNP1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)DC407815
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)OCLNP1
Gene ExpressionOCLNP1 [ NCBI-GEO ]   OCLNP1 [ EBI - ARRAY_EXPRESS ]   OCLNP1 [ SEEK ]   OCLNP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OCLNP1 [ Firebrowse - Broad ]
GenevisibleExpression of OCLNP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647859
GTEX Portal (Tissue expression)OCLNP1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OCLNP1
Protein Interaction databases
BioGRIDOCLNP1
STRING (EMBL)OCLNP1
ZODIACOCLNP1
Ontologies - Pathways
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOCLNP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun Jan 16 19:16:57 CET 2022

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