Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCM (oncomodulin)

Identity

Alias_symbol (synonym)OCM1
Other aliasOM
ONCM
HGNC (Hugo) OCM
LocusID (NCBI) 654231
Atlas_Id 71091
Location 7p22.1  [Link to chromosome band 7p22]
Location_base_pair Starts at 5880798 and ends at 5886363 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OCM   8105
Cards
Entrez_Gene (NCBI)OCM  654231  oncomodulin
AliasesOCM1; OM; ONCM
GeneCards (Weizmann)OCM
Ensembl hg19 (Hinxton)ENSG00000122543 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122543 [Gene_View]  chr7:5880798-5886363 [Contig_View]  OCM [Vega]
ICGC DataPortalENSG00000122543
TCGA cBioPortalOCM
AceView (NCBI)OCM
Genatlas (Paris)OCM
WikiGenes654231
SOURCE (Princeton)OCM
Genetics Home Reference (NIH)OCM
Genomic and cartography
GoldenPath hg38 (UCSC)OCM  -     chr7:5880798-5886363 +  7p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCM  -     7p22.1   [Description]    (hg19-Feb_2009)
EnsemblOCM - 7p22.1 [CytoView hg19]  OCM - 7p22.1 [CytoView hg38]
Mapping of homologs : NCBIOCM [Mapview hg19]  OCM [Mapview hg38]
OMIM164795   
Gene and transcription
Genbank (Entrez)BC069468 BC069512 BC069550 BC113704 BC113706
RefSeq transcript (Entrez)NM_001097622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OCM
Cluster EST : UnigeneHs.571315 [ NCBI ]
CGAP (NCI)Hs.571315
Alternative Splicing GalleryENSG00000122543
Gene ExpressionOCM [ NCBI-GEO ]   OCM [ EBI - ARRAY_EXPRESS ]   OCM [ SEEK ]   OCM [ MEM ]
Gene Expression Viewer (FireBrowse)OCM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654231
GTEX Portal (Tissue expression)OCM
Human Protein AtlasENSG00000122543-OCM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CE72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CE72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CE72
Splice isoforms : SwissVarP0CE72
PhosPhoSitePlusP0CE72
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Parvalbumin   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)OCM
DMDM Disease mutations654231
Blocks (Seattle)OCM
PDB (SRS)1TTX   
PDB (PDBSum)1TTX   
PDB (IMB)1TTX   
PDB (RSDB)1TTX   
Structural Biology KnowledgeBase1TTX   
SCOP (Structural Classification of Proteins)1TTX   
CATH (Classification of proteins structures)1TTX   
SuperfamilyP0CE72
Human Protein Atlas [tissue]ENSG00000122543-OCM [tissue]
Peptide AtlasP0CE72
IPIIPI00925469   
Protein Interaction databases
DIP (DOE-UCLA)P0CE72
IntAct (EBI)P0CE72
FunCoupENSG00000122543
BioGRIDOCM
STRING (EMBL)OCM
ZODIACOCM
Ontologies - Pathways
QuickGOP0CE72
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkOCM
Atlas of Cancer Signalling NetworkOCM
Wikipedia pathwaysOCM
Orthology - Evolution
OrthoDB654231
GeneTree (enSembl)ENSG00000122543
Phylogenetic Trees/Animal Genes : TreeFamOCM
HOVERGENP0CE72
HOGENOMP0CE72
Homologs : HomoloGeneOCM
Homology/Alignments : Family Browser (UCSC)OCM
Gene fusions - Rearrangements
Tumor Fusion PortalOCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCM
dbVarOCM
ClinVarOCM
1000_GenomesOCM 
Exome Variant ServerOCM
ExAC (Exome Aggregation Consortium)ENSG00000122543
GNOMAD BrowserENSG00000122543
Genetic variants : HAPMAP654231
Genomic Variants (DGV)OCM [DGVbeta]
DECIPHEROCM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOCM 
Mutations
ICGC Data PortalOCM 
TCGA Data PortalOCM 
Broad Tumor PortalOCM
OASIS PortalOCM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOCM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OCM
DgiDB (Drug Gene Interaction Database)OCM
DoCM (Curated mutations)OCM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OCM (select a term)
intoGenOCM
Cancer3DOCM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM164795   
Orphanet
DisGeNETOCM
MedgenOCM
Genetic Testing Registry OCM
NextProtP0CE72 [Medical]
TSGene654231
GENETestsOCM
Target ValidationOCM
Huge Navigator OCM [HugePedia]
snp3D : Map Gene to Disease654231
BioCentury BCIQOCM
ClinGenOCM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654231
Chemical/Pharm GKB GenePA31894
Clinical trialOCM
Miscellaneous
canSAR (ICR)OCM (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCM
EVEXOCM
GoPubMedOCM
iHOPOCM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:16:51 CET 2017

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