Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCM2 (oncomodulin 2)

Identity

Other aliasOCM
HGNC (Hugo) OCM2
LocusID (NCBI) 4951
Atlas_Id 71092
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 97984701 and ends at 97990104 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OCM2   34396
Cards
Entrez_Gene (NCBI)OCM2  4951  oncomodulin 2
AliasesOCM
GeneCards (Weizmann)OCM2
Ensembl hg19 (Hinxton)ENSG00000135175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135175 [Gene_View]  chr7:97984701-97990104 [Contig_View]  OCM2 [Vega]
ICGC DataPortalENSG00000135175
TCGA cBioPortalOCM2
AceView (NCBI)OCM2
Genatlas (Paris)OCM2
WikiGenes4951
SOURCE (Princeton)OCM2
Genetics Home Reference (NIH)OCM2
Genomic and cartography
GoldenPath hg38 (UCSC)OCM2  -     chr7:97984701-97990104 -  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCM2  -     7q21.3   [Description]    (hg19-Feb_2009)
EnsemblOCM2 - 7q21.3 [CytoView hg19]  OCM2 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBIOCM2 [Mapview hg19]  OCM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156841 HQ448431
RefSeq transcript (Entrez)NM_006188
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OCM2
Cluster EST : UnigeneHs.510456 [ NCBI ]
CGAP (NCI)Hs.510456
Alternative Splicing GalleryENSG00000135175
Gene ExpressionOCM2 [ NCBI-GEO ]   OCM2 [ EBI - ARRAY_EXPRESS ]   OCM2 [ SEEK ]   OCM2 [ MEM ]
Gene Expression Viewer (FireBrowse)OCM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4951
GTEX Portal (Tissue expression)OCM2
Human Protein AtlasENSG00000135175-OCM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0CE71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0CE71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0CE71
Splice isoforms : SwissVarP0CE71
PhosPhoSitePlusP0CE71
Domaine pattern : Prosite (Expaxy)EF_HAND_1 (PS00018)    EF_HAND_2 (PS50222)   
Domains : Interpro (EBI)EF-hand-dom_pair    EF_Hand_1_Ca_BS    EF_hand_dom    Parvalbumin   
Domain families : Pfam (Sanger)EF-hand_7 (PF13499)   
Domain families : Pfam (NCBI)pfam13499   
Domain families : Smart (EMBL)EFh (SM00054)  
Conserved Domain (NCBI)OCM2
DMDM Disease mutations4951
Blocks (Seattle)OCM2
SuperfamilyP0CE71
Human Protein Atlas [tissue]ENSG00000135175-OCM2 [tissue]
Peptide AtlasP0CE71
HPRD01274
IPIIPI00418189   
Protein Interaction databases
DIP (DOE-UCLA)P0CE71
IntAct (EBI)P0CE71
FunCoupENSG00000135175
BioGRIDOCM2
STRING (EMBL)OCM2
ZODIACOCM2
Ontologies - Pathways
QuickGOP0CE71
Ontology : AmiGOcalcium ion binding  
Ontology : EGO-EBIcalcium ion binding  
NDEx NetworkOCM2
Atlas of Cancer Signalling NetworkOCM2
Wikipedia pathwaysOCM2
Orthology - Evolution
OrthoDB4951
GeneTree (enSembl)ENSG00000135175
Phylogenetic Trees/Animal Genes : TreeFamOCM2
HOVERGENP0CE71
HOGENOMP0CE71
Homologs : HomoloGeneOCM2
Homology/Alignments : Family Browser (UCSC)OCM2
Gene fusions - Rearrangements
Fusion: Tumor Portal OCM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCM2
dbVarOCM2
ClinVarOCM2
1000_GenomesOCM2 
Exome Variant ServerOCM2
ExAC (Exome Aggregation Consortium)ENSG00000135175
GNOMAD BrowserENSG00000135175
Genetic variants : HAPMAP4951
Genomic Variants (DGV)OCM2 [DGVbeta]
DECIPHEROCM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOCM2 
Mutations
ICGC Data PortalOCM2 
TCGA Data PortalOCM2 
Broad Tumor PortalOCM2
OASIS PortalOCM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOCM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OCM2
DgiDB (Drug Gene Interaction Database)OCM2
DoCM (Curated mutations)OCM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OCM2 (select a term)
intoGenOCM2
Cancer3DOCM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOCM2
Genetic Testing Registry OCM2
NextProtP0CE71 [Medical]
TSGene4951
GENETestsOCM2
Target ValidationOCM2
Huge Navigator OCM2 [HugePedia]
snp3D : Map Gene to Disease4951
BioCentury BCIQOCM2
ClinGenOCM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4951
Chemical/Pharm GKB GenePA164724233
Clinical trialOCM2
Miscellaneous
canSAR (ICR)OCM2 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCM2
EVEXOCM2
GoPubMedOCM2
iHOPOCM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:19:46 CET 2017

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