Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OCSTAMP (osteoclast stimulatory transmembrane protein)

Identity

Alias_namesC20orf123
chromosome 20 open reading frame 123
Alias_symbol (synonym)dJ257E24.3
Other aliasOC-STAMP
HGNC (Hugo) OCSTAMP
LocusID (NCBI) 128506
Atlas_Id 52762
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 46541031 and ends at 46550574 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OCSTAMP   16116
Cards
Entrez_Gene (NCBI)OCSTAMP  128506  osteoclast stimulatory transmembrane protein
AliasesC20orf123; OC-STAMP; dJ257E24.3
GeneCards (Weizmann)OCSTAMP
Ensembl hg19 (Hinxton)ENSG00000149635 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149635 [Gene_View]  chr20:46541031-46550574 [Contig_View]  OCSTAMP [Vega]
ICGC DataPortalENSG00000149635
TCGA cBioPortalOCSTAMP
AceView (NCBI)OCSTAMP
Genatlas (Paris)OCSTAMP
WikiGenes128506
SOURCE (Princeton)OCSTAMP
Genetics Home Reference (NIH)OCSTAMP
Genomic and cartography
GoldenPath hg38 (UCSC)OCSTAMP  -     chr20:46541031-46550574 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OCSTAMP  -     20q13.12   [Description]    (hg19-Feb_2009)
EnsemblOCSTAMP - 20q13.12 [CytoView hg19]  OCSTAMP - 20q13.12 [CytoView hg38]
Mapping of homologs : NCBIOCSTAMP [Mapview hg19]  OCSTAMP [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_080721
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OCSTAMP
Cluster EST : UnigeneHs.526636 [ NCBI ]
CGAP (NCI)Hs.526636
Alternative Splicing GalleryENSG00000149635
Gene ExpressionOCSTAMP [ NCBI-GEO ]   OCSTAMP [ EBI - ARRAY_EXPRESS ]   OCSTAMP [ SEEK ]   OCSTAMP [ MEM ]
Gene Expression Viewer (FireBrowse)OCSTAMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128506
GTEX Portal (Tissue expression)OCSTAMP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BR26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BR26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BR26
Splice isoforms : SwissVarQ9BR26
PhosPhoSitePlusQ9BR26
Domains : Interpro (EBI)DC_STAMP-like   
Domain families : Pfam (Sanger)DC_STAMP (PF07782)   
Domain families : Pfam (NCBI)pfam07782   
Conserved Domain (NCBI)OCSTAMP
DMDM Disease mutations128506
Blocks (Seattle)OCSTAMP
SuperfamilyQ9BR26
Human Protein AtlasENSG00000149635
Peptide AtlasQ9BR26
IPIIPI00552151   
Protein Interaction databases
DIP (DOE-UCLA)Q9BR26
IntAct (EBI)Q9BR26
FunCoupENSG00000149635
BioGRIDOCSTAMP
STRING (EMBL)OCSTAMP
ZODIACOCSTAMP
Ontologies - Pathways
QuickGOQ9BR26
Ontology : AmiGOintegral component of membrane  positive regulation of macrophage fusion  positive regulation of osteoclast differentiation  cellular response to tumor necrosis factor  cellular response to estrogen stimulus  multinuclear osteoclast differentiation  positive regulation of osteoclast proliferation  
Ontology : EGO-EBIintegral component of membrane  positive regulation of macrophage fusion  positive regulation of osteoclast differentiation  cellular response to tumor necrosis factor  cellular response to estrogen stimulus  multinuclear osteoclast differentiation  positive regulation of osteoclast proliferation  
NDEx NetworkOCSTAMP
Atlas of Cancer Signalling NetworkOCSTAMP
Wikipedia pathwaysOCSTAMP
Orthology - Evolution
OrthoDB128506
GeneTree (enSembl)ENSG00000149635
Phylogenetic Trees/Animal Genes : TreeFamOCSTAMP
HOVERGENQ9BR26
HOGENOMQ9BR26
Homologs : HomoloGeneOCSTAMP
Homology/Alignments : Family Browser (UCSC)OCSTAMP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOCSTAMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OCSTAMP
dbVarOCSTAMP
ClinVarOCSTAMP
1000_GenomesOCSTAMP 
Exome Variant ServerOCSTAMP
ExAC (Exome Aggregation Consortium)OCSTAMP (select the gene name)
Genetic variants : HAPMAP128506
Genomic Variants (DGV)OCSTAMP [DGVbeta]
DECIPHEROCSTAMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOCSTAMP 
Mutations
ICGC Data PortalOCSTAMP 
TCGA Data PortalOCSTAMP 
Broad Tumor PortalOCSTAMP
OASIS PortalOCSTAMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOCSTAMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOCSTAMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OCSTAMP
DgiDB (Drug Gene Interaction Database)OCSTAMP
DoCM (Curated mutations)OCSTAMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OCSTAMP (select a term)
intoGenOCSTAMP
Cancer3DOCSTAMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOCSTAMP
Genetic Testing Registry OCSTAMP
NextProtQ9BR26 [Medical]
TSGene128506
GENETestsOCSTAMP
Target ValidationOCSTAMP
Huge Navigator OCSTAMP [HugePedia]
snp3D : Map Gene to Disease128506
BioCentury BCIQOCSTAMP
ClinGenOCSTAMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128506
Chemical/Pharm GKB GenePA25664
Clinical trialOCSTAMP
Miscellaneous
canSAR (ICR)OCSTAMP (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOCSTAMP
EVEXOCSTAMP
GoPubMedOCSTAMP
iHOPOCSTAMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:09:39 CEST 2017

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