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ODAM (odontogenic, ameloblast asssociated)

Identity

Alias_symbol (synonym)APin
FLJ20513
Other aliasAPIN
HGNC (Hugo) ODAM
LocusID (NCBI) 54959
Atlas_Id 43580
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70196527 and ends at 70204576 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODAM   26043
Cards
Entrez_Gene (NCBI)ODAM  54959  odontogenic, ameloblast asssociated
AliasesAPIN
GeneCards (Weizmann)ODAM
Ensembl hg19 (Hinxton)ENSG00000109205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000109205 [Gene_View]  chr4:70196527-70204576 [Contig_View]  ODAM [Vega]
ICGC DataPortalENSG00000109205
TCGA cBioPortalODAM
AceView (NCBI)ODAM
Genatlas (Paris)ODAM
WikiGenes54959
SOURCE (Princeton)ODAM
Genetics Home Reference (NIH)ODAM
Genomic and cartography
GoldenPath hg38 (UCSC)ODAM  -     chr4:70196527-70204576 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODAM  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblODAM - 4q13.3 [CytoView hg19]  ODAM - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIODAM [Mapview hg19]  ODAM [Mapview hg38]
OMIM614843   
Gene and transcription
Genbank (Entrez)AA025290 AK000520 AK098169 AK225547 BC017796
RefSeq transcript (Entrez)NM_017855
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODAM
Cluster EST : UnigeneHs.143811 [ NCBI ]
CGAP (NCI)Hs.143811
Alternative Splicing GalleryENSG00000109205
Gene ExpressionODAM [ NCBI-GEO ]   ODAM [ EBI - ARRAY_EXPRESS ]   ODAM [ SEEK ]   ODAM [ MEM ]
Gene Expression Viewer (FireBrowse)ODAM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54959
GTEX Portal (Tissue expression)ODAM
Protein : pattern, domain, 3D structure
UniProt/SwissProtA1E959   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA1E959  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA1E959
Splice isoforms : SwissVarA1E959
PhosPhoSitePlusA1E959
Domains : Interpro (EBI)Odam   
Domain families : Pfam (Sanger)ODAM (PF15424)   
Domain families : Pfam (NCBI)pfam15424   
Conserved Domain (NCBI)ODAM
DMDM Disease mutations54959
Blocks (Seattle)ODAM
SuperfamilyA1E959
Human Protein AtlasENSG00000109205
Peptide AtlasA1E959
HPRD13376
IPIIPI00152784   IPI00966301   IPI00968302   IPI00967233   
Protein Interaction databases
DIP (DOE-UCLA)A1E959
IntAct (EBI)A1E959
FunCoupENSG00000109205
BioGRIDODAM
STRING (EMBL)ODAM
ZODIACODAM
Ontologies - Pathways
QuickGOA1E959
Ontology : AmiGOpositive regulation of protein phosphorylation  protein binding  extracellular region  extracellular space  nucleus  cytoplasm  inflammatory response  positive regulation of gene expression  biomineral tissue development  regulation of actin cytoskeleton organization  odontogenesis of dentin-containing tooth  positive regulation of GTPase activity  cellular protein metabolic process  positive regulation of epithelial cell proliferation involved in wound healing  cell periphery  supramolecular fiber  
Ontology : EGO-EBIpositive regulation of protein phosphorylation  protein binding  extracellular region  extracellular space  nucleus  cytoplasm  inflammatory response  positive regulation of gene expression  biomineral tissue development  regulation of actin cytoskeleton organization  odontogenesis of dentin-containing tooth  positive regulation of GTPase activity  cellular protein metabolic process  positive regulation of epithelial cell proliferation involved in wound healing  cell periphery  supramolecular fiber  
NDEx NetworkODAM
Atlas of Cancer Signalling NetworkODAM
Wikipedia pathwaysODAM
Orthology - Evolution
OrthoDB54959
GeneTree (enSembl)ENSG00000109205
Phylogenetic Trees/Animal Genes : TreeFamODAM
HOVERGENA1E959
HOGENOMA1E959
Homologs : HomoloGeneODAM
Homology/Alignments : Family Browser (UCSC)ODAM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODAM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODAM
dbVarODAM
ClinVarODAM
1000_GenomesODAM 
Exome Variant ServerODAM
ExAC (Exome Aggregation Consortium)ODAM (select the gene name)
Genetic variants : HAPMAP54959
Genomic Variants (DGV)ODAM [DGVbeta]
DECIPHERODAM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODAM 
Mutations
ICGC Data PortalODAM 
TCGA Data PortalODAM 
Broad Tumor PortalODAM
OASIS PortalODAM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODAM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODAM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODAM
DgiDB (Drug Gene Interaction Database)ODAM
DoCM (Curated mutations)ODAM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODAM (select a term)
intoGenODAM
Cancer3DODAM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614843   
Orphanet
MedgenODAM
Genetic Testing Registry ODAM
NextProtA1E959 [Medical]
TSGene54959
GENETestsODAM
Huge Navigator ODAM [HugePedia]
snp3D : Map Gene to Disease54959
BioCentury BCIQODAM
ClinGenODAM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54959
Chemical/Pharm GKB GenePA145148342
Clinical trialODAM
Miscellaneous
canSAR (ICR)ODAM (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODAM
EVEXODAM
GoPubMedODAM
iHOPODAM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:29:35 CEST 2017

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