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ODAPH (odontogenesis associated phosphoprotein)

Identity

Alias_namesC4orf26
chromosome 4 open reading frame 26
Alias_symbol (synonym)FLJ23657
AI2A4
Other alias
HGNC (Hugo) ODAPH
LocusID (NCBI) 152816
Atlas_Id 79314
Location 4q21.1  [Link to chromosome band 4q21]
Location_base_pair Starts at 75556048 and ends at 75565893 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ODAPH   26300
Cards
Entrez_Gene (NCBI)ODAPH  152816  odontogenesis associated phosphoprotein
AliasesAI2A4; C4orf26
GeneCards (Weizmann)ODAPH
Ensembl hg19 (Hinxton)ENSG00000174792 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174792 [Gene_View]  ENSG00000174792 [Sequence]  chr4:75556048-75565893 [Contig_View]  ODAPH [Vega]
ICGC DataPortalENSG00000174792
TCGA cBioPortalODAPH
AceView (NCBI)ODAPH
Genatlas (Paris)ODAPH
WikiGenes152816
SOURCE (Princeton)ODAPH
Genetics Home Reference (NIH)ODAPH
Genomic and cartography
GoldenPath hg38 (UCSC)ODAPH  -     chr4:75556048-75565893 +  4q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODAPH  -     4q21.1   [Description]    (hg19-Feb_2009)
EnsemblODAPH - 4q21.1 [CytoView hg19]  ODAPH - 4q21.1 [CytoView hg38]
Mapping of homologs : NCBIODAPH [Mapview hg19]  ODAPH [Mapview hg38]
OMIM614829   614832   
Gene and transcription
Genbank (Entrez)AK074237 AK172776 AK300227 BC061701 BC117342
RefSeq transcript (Entrez)NM_001206981 NM_001257072 NM_178497
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODAPH
Cluster EST : UnigeneHs.24510 [ NCBI ]
CGAP (NCI)Hs.24510
Alternative Splicing GalleryENSG00000174792
Gene ExpressionODAPH [ NCBI-GEO ]   ODAPH [ EBI - ARRAY_EXPRESS ]   ODAPH [ SEEK ]   ODAPH [ MEM ]
Gene Expression Viewer (FireBrowse)ODAPH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152816
GTEX Portal (Tissue expression)ODAPH
Human Protein AtlasENSG00000174792-ODAPH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ17RF5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ17RF5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ17RF5
Splice isoforms : SwissVarQ17RF5
PhosPhoSitePlusQ17RF5
Domains : Interpro (EBI)DUF4721   
Domain families : Pfam (Sanger)DUF4721 (PF15848)   
Domain families : Pfam (NCBI)pfam15848   
Conserved Domain (NCBI)ODAPH
DMDM Disease mutations152816
Blocks (Seattle)ODAPH
SuperfamilyQ17RF5
Human Protein Atlas [tissue]ENSG00000174792-ODAPH [tissue]
Peptide AtlasQ17RF5
IPIIPI00152703   IPI00964351   IPI00911075   
Protein Interaction databases
DIP (DOE-UCLA)Q17RF5
IntAct (EBI)Q17RF5
FunCoupENSG00000174792
BioGRIDODAPH
STRING (EMBL)ODAPH
ZODIACODAPH
Ontologies - Pathways
QuickGOQ17RF5
Ontology : AmiGOprotein binding  extracellular region  
Ontology : EGO-EBIprotein binding  extracellular region  
NDEx NetworkODAPH
Atlas of Cancer Signalling NetworkODAPH
Wikipedia pathwaysODAPH
Orthology - Evolution
OrthoDB152816
GeneTree (enSembl)ENSG00000174792
Phylogenetic Trees/Animal Genes : TreeFamODAPH
HOVERGENQ17RF5
HOGENOMQ17RF5
Homologs : HomoloGeneODAPH
Homology/Alignments : Family Browser (UCSC)ODAPH
Gene fusions - Rearrangements
Fusion : QuiverODAPH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODAPH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODAPH
dbVarODAPH
ClinVarODAPH
1000_GenomesODAPH 
Exome Variant ServerODAPH
ExAC (Exome Aggregation Consortium)ENSG00000174792
GNOMAD BrowserENSG00000174792
Varsome BrowserODAPH
Genetic variants : HAPMAP152816
Genomic Variants (DGV)ODAPH [DGVbeta]
DECIPHERODAPH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODAPH 
Mutations
ICGC Data PortalODAPH 
TCGA Data PortalODAPH 
Broad Tumor PortalODAPH
OASIS PortalODAPH [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDODAPH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODAPH
DgiDB (Drug Gene Interaction Database)ODAPH
DoCM (Curated mutations)ODAPH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODAPH (select a term)
intoGenODAPH
Cancer3DODAPH(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614829    614832   
Orphanet
DisGeNETODAPH
MedgenODAPH
Genetic Testing Registry ODAPH
NextProtQ17RF5 [Medical]
TSGene152816
GENETestsODAPH
Target ValidationODAPH
Huge Navigator ODAPH [HugePedia]
snp3D : Map Gene to Disease152816
BioCentury BCIQODAPH
ClinGenODAPH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152816
Chemical/Pharm GKB GenePA145008917
Clinical trialODAPH
Miscellaneous
canSAR (ICR)ODAPH (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODAPH
EVEXODAPH
GoPubMedODAPH
iHOPODAPH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:20:51 CEST 2018

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