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ODF1 (outer dense fiber of sperm tails 1)

Identity

Alias_namesouter dense fibre of sperm tails 1
Alias_symbol (synonym)ODFPG
ODF27
RT7
HSPB10
CT133
Other aliasODF
ODF2
ODFP
ODFPGA
ODFPGB
SODF
HGNC (Hugo) ODF1
LocusID (NCBI) 4956
Atlas_Id 71093
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 102551620 and ends at 102561017 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKRD46 (8q22.2) / ODF1 (8q22.3)RIMS2 (8q22.3) / ODF1 (8q22.3)TTC28 (22q12.1) / ODF1 (8q22.3)
ANKRD46 ODF1RIMS2 ODF1TTC28 ODF1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF1   8113
Cards
Entrez_Gene (NCBI)ODF1  4956  outer dense fiber of sperm tails 1
AliasesCT133; HSPB10; ODF; ODF2; 
ODF27; ODFP; ODFPG; ODFPGA; ODFPGB; RT7; SODF
GeneCards (Weizmann)ODF1
Ensembl hg19 (Hinxton)ENSG00000155087 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155087 [Gene_View]  chr8:102551620-102561017 [Contig_View]  ODF1 [Vega]
ICGC DataPortalENSG00000155087
TCGA cBioPortalODF1
AceView (NCBI)ODF1
Genatlas (Paris)ODF1
WikiGenes4956
SOURCE (Princeton)ODF1
Genetics Home Reference (NIH)ODF1
Genomic and cartography
GoldenPath hg38 (UCSC)ODF1  -     chr8:102551620-102561017 +  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODF1  -     8q22.3   [Description]    (hg19-Feb_2009)
EnsemblODF1 - 8q22.3 [CytoView hg19]  ODF1 - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBIODF1 [Mapview hg19]  ODF1 [Mapview hg38]
OMIM182878   
Gene and transcription
Genbank (Entrez)AK315276 BC104456 BC104457 BG214987 DB457574
RefSeq transcript (Entrez)NM_024410
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODF1
Cluster EST : UnigeneHs.159274 [ NCBI ]
CGAP (NCI)Hs.159274
Alternative Splicing GalleryENSG00000155087
Gene ExpressionODF1 [ NCBI-GEO ]   ODF1 [ EBI - ARRAY_EXPRESS ]   ODF1 [ SEEK ]   ODF1 [ MEM ]
Gene Expression Viewer (FireBrowse)ODF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4956
GTEX Portal (Tissue expression)ODF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14990   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14990  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14990
Splice isoforms : SwissVarQ14990
PhosPhoSitePlusQ14990
Domains : Interpro (EBI)A-crystallin/Hsp20_dom    HSP20-like_chaperone   
Domain families : Pfam (Sanger)HSP20 (PF00011)   
Domain families : Pfam (NCBI)pfam00011   
Conserved Domain (NCBI)ODF1
DMDM Disease mutations4956
Blocks (Seattle)ODF1
SuperfamilyQ14990
Human Protein AtlasENSG00000155087
Peptide AtlasQ14990
HPRD01687
IPIIPI00001677   IPI00790997   
Protein Interaction databases
DIP (DOE-UCLA)Q14990
IntAct (EBI)Q14990
FunCoupENSG00000155087
BioGRIDODF1
STRING (EMBL)ODF1
ZODIACODF1
Ontologies - Pathways
QuickGOQ14990
Ontology : AmiGOouter dense fiber  protein binding  nucleus  multicellular organism development  spermatogenesis  protein domain specific binding  cell differentiation  
Ontology : EGO-EBIouter dense fiber  protein binding  nucleus  multicellular organism development  spermatogenesis  protein domain specific binding  cell differentiation  
NDEx NetworkODF1
Atlas of Cancer Signalling NetworkODF1
Wikipedia pathwaysODF1
Orthology - Evolution
OrthoDB4956
GeneTree (enSembl)ENSG00000155087
Phylogenetic Trees/Animal Genes : TreeFamODF1
HOVERGENQ14990
HOGENOMQ14990
Homologs : HomoloGeneODF1
Homology/Alignments : Family Browser (UCSC)ODF1
Gene fusions - Rearrangements
Fusion: TCGAANKRD46 ODF1
Fusion: TCGARIMS2 ODF1
Fusion: TCGATTC28 ODF1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF1
dbVarODF1
ClinVarODF1
1000_GenomesODF1 
Exome Variant ServerODF1
ExAC (Exome Aggregation Consortium)ODF1 (select the gene name)
Genetic variants : HAPMAP4956
Genomic Variants (DGV)ODF1 [DGVbeta]
DECIPHERODF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODF1 
Mutations
ICGC Data PortalODF1 
TCGA Data PortalODF1 
Broad Tumor PortalODF1
OASIS PortalODF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF1
DgiDB (Drug Gene Interaction Database)ODF1
DoCM (Curated mutations)ODF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF1 (select a term)
intoGenODF1
Cancer3DODF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM182878   
Orphanet
MedgenODF1
Genetic Testing Registry ODF1
NextProtQ14990 [Medical]
TSGene4956
GENETestsODF1
Target ValidationODF1
Huge Navigator ODF1 [HugePedia]
snp3D : Map Gene to Disease4956
BioCentury BCIQODF1
ClinGenODF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4956
Chemical/Pharm GKB GenePA31901
Clinical trialODF1
Miscellaneous
canSAR (ICR)ODF1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF1
EVEXODF1
GoPubMedODF1
iHOPODF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:29 CEST 2017

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