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ODF2 (outer dense fiber of sperm tails 2)

Identity

Alias_namesouter dense fibre of sperm tails 2
Alias_symbol (synonym)ODF84
CT134
Other aliasODF2/1
ODF2/2
HGNC (Hugo) ODF2
LocusID (NCBI) 4957
Atlas_Id 54516
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128456006 and ends at 128501292 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARFRP1 (20q13.33) / ODF2 (9q34.11)GLE1 (9q34.11) / ODF2 (9q34.11)ODF2 (9q34.11) / PLAT (8p11.21)
ODF2 (9q34.11) / SLC27A4 (9q34.11)ODF2 (9q34.11) / SLC2A8 (9q33.3)GLE1 9q34.11 / ODF2 9q34.11
ODF2 9q34.11 / SLC2A8 9q33.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF2   8114
Cards
Entrez_Gene (NCBI)ODF2  4957  outer dense fiber of sperm tails 2
AliasesCT134; ODF2/1; ODF2/2; ODF84
GeneCards (Weizmann)ODF2
Ensembl hg19 (Hinxton)ENSG00000136811 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136811 [Gene_View]  chr9:128456006-128501292 [Contig_View]  ODF2 [Vega]
ICGC DataPortalENSG00000136811
TCGA cBioPortalODF2
AceView (NCBI)ODF2
Genatlas (Paris)ODF2
WikiGenes4957
SOURCE (Princeton)ODF2
Genetics Home Reference (NIH)ODF2
Genomic and cartography
GoldenPath hg38 (UCSC)ODF2  -     chr9:128456006-128501292 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODF2  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblODF2 - 9q34.11 [CytoView hg19]  ODF2 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIODF2 [Mapview hg19]  ODF2 [Mapview hg38]
OMIM602015   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001242352 NM_001242353 NM_001242354 NM_002540 NM_153432 NM_153433 NM_153435 NM_153436 NM_153437 NM_153439 NM_153440
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODF2
Cluster EST : UnigeneHs.129055 [ NCBI ]
CGAP (NCI)Hs.129055
Alternative Splicing GalleryENSG00000136811
Gene ExpressionODF2 [ NCBI-GEO ]   ODF2 [ EBI - ARRAY_EXPRESS ]   ODF2 [ SEEK ]   ODF2 [ MEM ]
Gene Expression Viewer (FireBrowse)ODF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4957
GTEX Portal (Tissue expression)ODF2
Human Protein AtlasENSG00000136811-ODF2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5BJF6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5BJF6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5BJF6
Splice isoforms : SwissVarQ5BJF6
PhosPhoSitePlusQ5BJF6
Domains : Interpro (EBI)Odf2-rel   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ODF2
DMDM Disease mutations4957
Blocks (Seattle)ODF2
SuperfamilyQ5BJF6
Human Protein Atlas [tissue]ENSG00000136811-ODF2 [tissue]
Peptide AtlasQ5BJF6
HPRD03601
IPIIPI00640027   IPI00855984   IPI00855929   IPI00642221   IPI01011877   IPI00911067   IPI01011574   IPI00171245   IPI00980794   IPI00908870   IPI00515017   IPI00640224   IPI01009404   IPI00001758   IPI01010706   IPI00514695   IPI00513754   
Protein Interaction databases
DIP (DOE-UCLA)Q5BJF6
IntAct (EBI)Q5BJF6
FunCoupENSG00000136811
BioGRIDODF2
STRING (EMBL)ODF2
ZODIACODF2
Ontologies - Pathways
QuickGOQ5BJF6
Ontology : AmiGOG2/M transition of mitotic cell cycle  spindle pole  outer dense fiber  structural molecule activity  protein binding  nucleus  centrosome  centriole  cytosol  microtubule  multicellular organism development  spermatid development  ciliary transition fiber  ciliary basal body docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  spindle pole  outer dense fiber  structural molecule activity  protein binding  nucleus  centrosome  centriole  cytosol  microtubule  multicellular organism development  spermatid development  ciliary transition fiber  ciliary basal body docking  
NDEx NetworkODF2
Atlas of Cancer Signalling NetworkODF2
Wikipedia pathwaysODF2
Orthology - Evolution
OrthoDB4957
GeneTree (enSembl)ENSG00000136811
Phylogenetic Trees/Animal Genes : TreeFamODF2
HOVERGENQ5BJF6
HOGENOMQ5BJF6
Homologs : HomoloGeneODF2
Homology/Alignments : Family Browser (UCSC)ODF2
Gene fusions - Rearrangements
Fusion : MitelmanGLE1/ODF2 [9q34.11/9q34.11]  [t(9;9)(q34;q34)]  
Fusion : MitelmanODF2/SLC27A4 [9q34.11/9q34.11]  [dup(9)(q34q34)]  
Fusion : MitelmanODF2/SLC2A8 [9q34.11/9q33.3]  [t(9;9)(q33;q34)]  
Fusion: TCGA_MDACCGLE1 9q34.11 ODF2 9q34.11 OV
Fusion: TCGA_MDACCODF2 9q34.11 SLC2A8 9q33.3 BRCA
Tumor Fusion PortalODF2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF2
dbVarODF2
ClinVarODF2
1000_GenomesODF2 
Exome Variant ServerODF2
ExAC (Exome Aggregation Consortium)ENSG00000136811
GNOMAD BrowserENSG00000136811
Genetic variants : HAPMAP4957
Genomic Variants (DGV)ODF2 [DGVbeta]
DECIPHERODF2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODF2 
Mutations
ICGC Data PortalODF2 
TCGA Data PortalODF2 
Broad Tumor PortalODF2
OASIS PortalODF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF2
DgiDB (Drug Gene Interaction Database)ODF2
DoCM (Curated mutations)ODF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF2 (select a term)
intoGenODF2
Cancer3DODF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602015   
Orphanet
DisGeNETODF2
MedgenODF2
Genetic Testing Registry ODF2
NextProtQ5BJF6 [Medical]
TSGene4957
GENETestsODF2
Target ValidationODF2
Huge Navigator ODF2 [HugePedia]
snp3D : Map Gene to Disease4957
BioCentury BCIQODF2
ClinGenODF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4957
Chemical/Pharm GKB GenePA31902
Clinical trialODF2
Miscellaneous
canSAR (ICR)ODF2 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF2
EVEXODF2
GoPubMedODF2
iHOPODF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:27:09 CET 2017

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