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ODF2L (outer dense fiber of sperm tails 2-like)

Identity

Alias_namesouter dense fiber of sperm tails 2-like
Alias_symbol (synonym)KIAA1229
Other aliasdJ977L11.1
HGNC (Hugo) ODF2L
LocusID (NCBI) 57489
Atlas_Id 71094
Location 1p22.3  [Link to chromosome band 1p22]
Location_base_pair Starts at 86815777 and ends at 86862025 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF2L   29225
Cards
Entrez_Gene (NCBI)ODF2L  57489  outer dense fiber of sperm tails 2-like
AliasesdJ977L11.1
GeneCards (Weizmann)ODF2L
Ensembl hg19 (Hinxton)ENSG00000122417 [Gene_View]  chr1:86815777-86862025 [Contig_View]  ODF2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000122417 [Gene_View]  chr1:86815777-86862025 [Contig_View]  ODF2L [Vega]
ICGC DataPortalENSG00000122417
TCGA cBioPortalODF2L
AceView (NCBI)ODF2L
Genatlas (Paris)ODF2L
WikiGenes57489
SOURCE (Princeton)ODF2L
Genetics Home Reference (NIH)ODF2L
Genomic and cartography
GoldenPath hg19 (UCSC)ODF2L  -     chr1:86815777-86862025 -  1p22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ODF2L  -     1p22.3   [Description]    (hg38-Dec_2013)
EnsemblODF2L - 1p22.3 [CytoView hg19]  ODF2L - 1p22.3 [CytoView hg38]
Mapping of homologs : NCBIODF2L [Mapview hg19]  ODF2L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033055 AK302792 AK303209 AK308351 BC009779
RefSeq transcript (Entrez)NM_001007022 NM_001184765 NM_001184766 NM_020729
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ODF2L
Cluster EST : UnigeneHs.149360 [ NCBI ]
CGAP (NCI)Hs.149360
Alternative Splicing GalleryENSG00000122417
Gene ExpressionODF2L [ NCBI-GEO ]   ODF2L [ EBI - ARRAY_EXPRESS ]   ODF2L [ SEEK ]   ODF2L [ MEM ]
Gene Expression Viewer (FireBrowse)ODF2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57489
GTEX Portal (Tissue expression)ODF2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULJ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULJ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULJ1
Splice isoforms : SwissVarQ9ULJ1
PhosPhoSitePlusQ9ULJ1
Domains : Interpro (EBI)Odf2-like    Odf2-rel   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ODF2L
DMDM Disease mutations57489
Blocks (Seattle)ODF2L
SuperfamilyQ9ULJ1
Human Protein AtlasENSG00000122417
Peptide AtlasQ9ULJ1
HPRD11134
IPIIPI00556188   IPI00737794   IPI00984018   IPI00478622   IPI00910887   IPI00008135   IPI00909603   IPI00980482   IPI00978095   IPI00979908   IPI00178821   IPI00873790   IPI00979957   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULJ1
IntAct (EBI)Q9ULJ1
FunCoupENSG00000122417
BioGRIDODF2L
STRING (EMBL)ODF2L
ZODIACODF2L
Ontologies - Pathways
QuickGOQ9ULJ1
Ontology : AmiGOcentrosome  
Ontology : EGO-EBIcentrosome  
NDEx NetworkODF2L
Atlas of Cancer Signalling NetworkODF2L
Wikipedia pathwaysODF2L
Orthology - Evolution
OrthoDB57489
GeneTree (enSembl)ENSG00000122417
Phylogenetic Trees/Animal Genes : TreeFamODF2L
HOVERGENQ9ULJ1
HOGENOMQ9ULJ1
Homologs : HomoloGeneODF2L
Homology/Alignments : Family Browser (UCSC)ODF2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF2L
dbVarODF2L
ClinVarODF2L
1000_GenomesODF2L 
Exome Variant ServerODF2L
ExAC (Exome Aggregation Consortium)ODF2L (select the gene name)
Genetic variants : HAPMAP57489
Genomic Variants (DGV)ODF2L [DGVbeta]
DECIPHER (Syndromes)1:86815777-86862025  ENSG00000122417
CONAN: Copy Number AnalysisODF2L 
Mutations
ICGC Data PortalODF2L 
TCGA Data PortalODF2L 
Broad Tumor PortalODF2L
OASIS PortalODF2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF2L
DgiDB (Drug Gene Interaction Database)ODF2L
DoCM (Curated mutations)ODF2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF2L (select a term)
intoGenODF2L
Cancer3DODF2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenODF2L
Genetic Testing Registry ODF2L
NextProtQ9ULJ1 [Medical]
TSGene57489
GENETestsODF2L
Huge Navigator ODF2L [HugePedia]
snp3D : Map Gene to Disease57489
BioCentury BCIQODF2L
ClinGenODF2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57489
Chemical/Pharm GKB GenePA142671232
Clinical trialODF2L
Miscellaneous
canSAR (ICR)ODF2L (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF2L
EVEXODF2L
GoPubMedODF2L
iHOPODF2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:47 CET 2017

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