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ODF3 (outer dense fiber of sperm tails 3)

Identity

Alias_symbol (synonym)SHIPPO1
hSHIPPO
CT135
Other aliasTISP50
HGNC (Hugo) ODF3
LocusID (NCBI) 113746
Atlas_Id 71095
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 196761 and ends at 200258 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF3   19905
Cards
Entrez_Gene (NCBI)ODF3  113746  outer dense fiber of sperm tails 3
AliasesCT135; SHIPPO1; TISP50
GeneCards (Weizmann)ODF3
Ensembl hg19 (Hinxton)ENSG00000177947 [Gene_View]  chr11:196761-200258 [Contig_View]  ODF3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177947 [Gene_View]  chr11:196761-200258 [Contig_View]  ODF3 [Vega]
ICGC DataPortalENSG00000177947
TCGA cBioPortalODF3
AceView (NCBI)ODF3
Genatlas (Paris)ODF3
WikiGenes113746
SOURCE (Princeton)ODF3
Genetics Home Reference (NIH)ODF3
Genomic and cartography
GoldenPath hg19 (UCSC)ODF3  -     chr11:196761-200258 +  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ODF3  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblODF3 - 11p15.5 [CytoView hg19]  ODF3 - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIODF3 [Mapview hg19]  ODF3 [Mapview hg38]
OMIM608356   
Gene and transcription
Genbank (Entrez)AB067774 AL133658 AY713299 BC126222 BC126248
RefSeq transcript (Entrez)NM_001286136 NM_053280
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)ODF3
Cluster EST : UnigeneHs.350949 [ NCBI ]
CGAP (NCI)Hs.350949
Alternative Splicing GalleryENSG00000177947
Gene ExpressionODF3 [ NCBI-GEO ]   ODF3 [ EBI - ARRAY_EXPRESS ]   ODF3 [ SEEK ]   ODF3 [ MEM ]
Gene Expression Viewer (FireBrowse)ODF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113746
GTEX Portal (Tissue expression)ODF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PU9
Splice isoforms : SwissVarQ96PU9
PhosPhoSitePlusQ96PU9
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)ODF3
DMDM Disease mutations113746
Blocks (Seattle)ODF3
SuperfamilyQ96PU9
Human Protein AtlasENSG00000177947
Peptide AtlasQ96PU9
HPRD16323
IPIIPI00102524   IPI00743900   IPI00930376   IPI01026209   IPI00922664   
Protein Interaction databases
DIP (DOE-UCLA)Q96PU9
IntAct (EBI)Q96PU9
FunCoupENSG00000177947
BioGRIDODF3
STRING (EMBL)ODF3
ZODIACODF3
Ontologies - Pathways
QuickGOQ96PU9
Ontology : AmiGOouter dense fiber  multicellular organismal development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIouter dense fiber  multicellular organismal development  spermatogenesis  cell differentiation  
NDEx NetworkODF3
Atlas of Cancer Signalling NetworkODF3
Wikipedia pathwaysODF3
Orthology - Evolution
OrthoDB113746
GeneTree (enSembl)ENSG00000177947
Phylogenetic Trees/Animal Genes : TreeFamODF3
HOVERGENQ96PU9
HOGENOMQ96PU9
Homologs : HomoloGeneODF3
Homology/Alignments : Family Browser (UCSC)ODF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF3
dbVarODF3
ClinVarODF3
1000_GenomesODF3 
Exome Variant ServerODF3
ExAC (Exome Aggregation Consortium)ODF3 (select the gene name)
Genetic variants : HAPMAP113746
Genomic Variants (DGV)ODF3 [DGVbeta]
DECIPHER (Syndromes)11:196761-200258  ENSG00000177947
CONAN: Copy Number AnalysisODF3 
Mutations
ICGC Data PortalODF3 
TCGA Data PortalODF3 
Broad Tumor PortalODF3
OASIS PortalODF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF3
DgiDB (Drug Gene Interaction Database)ODF3
DoCM (Curated mutations)ODF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF3 (select a term)
intoGenODF3
Cancer3DODF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608356   
Orphanet
MedgenODF3
Genetic Testing Registry ODF3
NextProtQ96PU9 [Medical]
TSGene113746
GENETestsODF3
Huge Navigator ODF3 [HugePedia]
snp3D : Map Gene to Disease113746
BioCentury BCIQODF3
ClinGenODF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113746
Chemical/Pharm GKB GenePA134952791
Clinical trialODF3
Miscellaneous
canSAR (ICR)ODF3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF3
EVEXODF3
GoPubMedODF3
iHOPODF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:47 CET 2017

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