Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ODF3 (outer dense fiber of sperm tails 3)

Identity

Alias (NCBI)CT135
SHIPPO1
TISP50
HGNC (Hugo) ODF3
HGNC Alias symbSHIPPO1
hSHIPPO
CT135
HGNC Alias namecancer/testis antigen 135
LocusID (NCBI) 113746
Atlas_Id 71095
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 196761 and ends at 200258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ODF3   19905
Cards
Entrez_Gene (NCBI)ODF3    outer dense fiber of sperm tails 3
AliasesCT135; SHIPPO1; TISP50
GeneCards (Weizmann)ODF3
Ensembl hg19 (Hinxton)ENSG00000177947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177947 [Gene_View]  ENSG00000177947 [Sequence]  chr11:196761-200258 [Contig_View]  ODF3 [Vega]
ICGC DataPortalENSG00000177947
TCGA cBioPortalODF3
AceView (NCBI)ODF3
Genatlas (Paris)ODF3
SOURCE (Princeton)ODF3
Genetics Home Reference (NIH)ODF3
Genomic and cartography
GoldenPath hg38 (UCSC)ODF3  -     chr11:196761-200258 +  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODF3  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathODF3 - 11p15.5 [CytoView hg19]  ODF3 - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000177947
Genome Data Viewer NCBIODF3 [Mapview hg19]  
OMIM608356   
Gene and transcription
Genbank (Entrez)AB067774 AL133658 AY713299 BC126222 BC126248
RefSeq transcript (Entrez)NM_001286136 NM_053280
Consensus coding sequences : CCDS (NCBI)ODF3
Gene ExpressionODF3 [ NCBI-GEO ]   ODF3 [ EBI - ARRAY_EXPRESS ]   ODF3 [ SEEK ]   ODF3 [ MEM ]
Gene Expression Viewer (FireBrowse)ODF3 [ Firebrowse - Broad ]
GenevisibleExpression of ODF3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113746
GTEX Portal (Tissue expression)ODF3
Human Protein AtlasENSG00000177947-ODF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PU9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PU9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PU9
PhosPhoSitePlusQ96PU9
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)ODF3
SuperfamilyQ96PU9
AlphaFold pdb e-kbQ96PU9   
Human Protein Atlas [tissue]ENSG00000177947-ODF3 [tissue]
HPRD16323
Protein Interaction databases
DIP (DOE-UCLA)Q96PU9
IntAct (EBI)Q96PU9
BioGRIDODF3
STRING (EMBL)ODF3
ZODIACODF3
Ontologies - Pathways
QuickGOQ96PU9
Ontology : AmiGOouter dense fiber  protein binding  cytoplasm  cytoskeleton  multicellular organism development  spermatogenesis  cell differentiation  
Ontology : EGO-EBIouter dense fiber  protein binding  cytoplasm  cytoskeleton  multicellular organism development  spermatogenesis  cell differentiation  
NDEx NetworkODF3
Atlas of Cancer Signalling NetworkODF3
Wikipedia pathwaysODF3
Orthology - Evolution
OrthoDB113746
GeneTree (enSembl)ENSG00000177947
Phylogenetic Trees/Animal Genes : TreeFamODF3
Homologs : HomoloGeneODF3
Homology/Alignments : Family Browser (UCSC)ODF3
Gene fusions - Rearrangements
Fusion : QuiverODF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF3
dbVarODF3
ClinVarODF3
MonarchODF3
1000_GenomesODF3 
Exome Variant ServerODF3
GNOMAD BrowserENSG00000177947
Varsome BrowserODF3
ACMGODF3 variants
VarityQ96PU9
Genomic Variants (DGV)ODF3 [DGVbeta]
DECIPHERODF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODF3 
Mutations
ICGC Data PortalODF3 
TCGA Data PortalODF3 
Broad Tumor PortalODF3
OASIS PortalODF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DODF3
Mutations and Diseases : HGMDODF3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaODF3
DgiDB (Drug Gene Interaction Database)ODF3
DoCM (Curated mutations)ODF3
CIViC (Clinical Interpretations of Variants in Cancer)ODF3
Cancer3DODF3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608356   
Orphanet
DisGeNETODF3
MedgenODF3
Genetic Testing Registry ODF3
NextProtQ96PU9 [Medical]
GENETestsODF3
Target ValidationODF3
Huge Navigator ODF3 [HugePedia]
ClinGenODF3
Clinical trials, drugs, therapy
MyCancerGenomeODF3
Protein Interactions : CTDODF3
Pharm GKB GenePA134952791
PharosQ96PU9
Clinical trialODF3
Miscellaneous
canSAR (ICR)ODF3
HarmonizomeODF3
DataMed IndexODF3
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXODF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:13:32 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.