Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ODF3B (outer dense fiber of sperm tails 3B)

Identity

Other aliasODF3L3
HGNC (Hugo) ODF3B
LocusID (NCBI) 440836
Atlas_Id 71096
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50530409 and ends at 50532579 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ODF3B (22q13.33) / ZNF609 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF3B   34388
Cards
Entrez_Gene (NCBI)ODF3B  440836  outer dense fiber of sperm tails 3B
AliasesODF3L3
GeneCards (Weizmann)ODF3B
Ensembl hg19 (Hinxton)ENSG00000177989 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177989 [Gene_View]  chr22:50530409-50532579 [Contig_View]  ODF3B [Vega]
ICGC DataPortalENSG00000177989
TCGA cBioPortalODF3B
AceView (NCBI)ODF3B
Genatlas (Paris)ODF3B
WikiGenes440836
SOURCE (Princeton)ODF3B
Genetics Home Reference (NIH)ODF3B
Genomic and cartography
GoldenPath hg38 (UCSC)ODF3B  -     chr22:50530409-50532579 -  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODF3B  -     22q13.33   [Description]    (hg19-Feb_2009)
EnsemblODF3B - 22q13.33 [CytoView hg19]  ODF3B - 22q13.33 [CytoView hg38]
Mapping of homologs : NCBIODF3B [Mapview hg19]  ODF3B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW291097 BC127934 BC127935 BC172351 BG149596
RefSeq transcript (Entrez)NM_001014440
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODF3B
Cluster EST : UnigeneHs.531314 [ NCBI ]
CGAP (NCI)Hs.531314
Alternative Splicing GalleryENSG00000177989
Gene ExpressionODF3B [ NCBI-GEO ]   ODF3B [ EBI - ARRAY_EXPRESS ]   ODF3B [ SEEK ]   ODF3B [ MEM ]
Gene Expression Viewer (FireBrowse)ODF3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440836
GTEX Portal (Tissue expression)ODF3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MYP8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MYP8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MYP8
Splice isoforms : SwissVarA8MYP8
PhosPhoSitePlusA8MYP8
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)ODF3B
DMDM Disease mutations440836
Blocks (Seattle)ODF3B
SuperfamilyA8MYP8
Human Protein AtlasENSG00000177989
Peptide AtlasA8MYP8
HPRD18640
IPIIPI00877138   IPI00827954   IPI00878294   IPI00878101   IPI00878402   IPI00878940   
Protein Interaction databases
DIP (DOE-UCLA)A8MYP8
IntAct (EBI)A8MYP8
FunCoupENSG00000177989
BioGRIDODF3B
STRING (EMBL)ODF3B
ZODIACODF3B
Ontologies - Pathways
QuickGOA8MYP8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkODF3B
Atlas of Cancer Signalling NetworkODF3B
Wikipedia pathwaysODF3B
Orthology - Evolution
OrthoDB440836
GeneTree (enSembl)ENSG00000177989
Phylogenetic Trees/Animal Genes : TreeFamODF3B
HOVERGENA8MYP8
HOGENOMA8MYP8
Homologs : HomoloGeneODF3B
Homology/Alignments : Family Browser (UCSC)ODF3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF3B
dbVarODF3B
ClinVarODF3B
1000_GenomesODF3B 
Exome Variant ServerODF3B
ExAC (Exome Aggregation Consortium)ODF3B (select the gene name)
Genetic variants : HAPMAP440836
Genomic Variants (DGV)ODF3B [DGVbeta]
DECIPHERODF3B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODF3B 
Mutations
ICGC Data PortalODF3B 
TCGA Data PortalODF3B 
Broad Tumor PortalODF3B
OASIS PortalODF3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF3B
DgiDB (Drug Gene Interaction Database)ODF3B
DoCM (Curated mutations)ODF3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF3B (select a term)
intoGenODF3B
Cancer3DODF3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenODF3B
Genetic Testing Registry ODF3B
NextProtA8MYP8 [Medical]
TSGene440836
GENETestsODF3B
Target ValidationODF3B
Huge Navigator ODF3B [HugePedia]
snp3D : Map Gene to Disease440836
BioCentury BCIQODF3B
ClinGenODF3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440836
Chemical/Pharm GKB GenePA162398386
Clinical trialODF3B
Miscellaneous
canSAR (ICR)ODF3B (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF3B
EVEXODF3B
GoPubMedODF3B
iHOPODF3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:33:30 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.