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ODF3L1 (outer dense fiber of sperm tails 3 like 1)

Identity

Alias_symbol (synonym)MGC48986
Other alias-
HGNC (Hugo) ODF3L1
LocusID (NCBI) 161753
Atlas_Id 71097
Location 15q24.2  [Link to chromosome band 15q24]
Location_base_pair Starts at 75723978 and ends at 75727688 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ODF3L1 (15q24.2) / SFTPB (2p11.2)UBE2Q2 (15q24.2) / ODF3L1 (15q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF3L1   28735
Cards
Entrez_Gene (NCBI)ODF3L1  161753  outer dense fiber of sperm tails 3 like 1
Aliases
GeneCards (Weizmann)ODF3L1
Ensembl hg19 (Hinxton)ENSG00000182950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182950 [Gene_View]  chr15:75723978-75727688 [Contig_View]  ODF3L1 [Vega]
ICGC DataPortalENSG00000182950
TCGA cBioPortalODF3L1
AceView (NCBI)ODF3L1
Genatlas (Paris)ODF3L1
WikiGenes161753
SOURCE (Princeton)ODF3L1
Genetics Home Reference (NIH)ODF3L1
Genomic and cartography
GoldenPath hg38 (UCSC)ODF3L1  -     chr15:75723978-75727688 +  15q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODF3L1  -     15q24.2   [Description]    (hg19-Feb_2009)
EnsemblODF3L1 - 15q24.2 [CytoView hg19]  ODF3L1 - 15q24.2 [CytoView hg38]
Mapping of homologs : NCBIODF3L1 [Mapview hg19]  ODF3L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI393597 BC039862 HQ448534
RefSeq transcript (Entrez)NM_175881
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODF3L1
Cluster EST : UnigeneHs.144348 [ NCBI ]
CGAP (NCI)Hs.144348
Alternative Splicing GalleryENSG00000182950
Gene ExpressionODF3L1 [ NCBI-GEO ]   ODF3L1 [ EBI - ARRAY_EXPRESS ]   ODF3L1 [ SEEK ]   ODF3L1 [ MEM ]
Gene Expression Viewer (FireBrowse)ODF3L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)161753
GTEX Portal (Tissue expression)ODF3L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXM7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXM7
Splice isoforms : SwissVarQ8IXM7
PhosPhoSitePlusQ8IXM7
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)ODF3L1
DMDM Disease mutations161753
Blocks (Seattle)ODF3L1
SuperfamilyQ8IXM7
Human Protein AtlasENSG00000182950
Peptide AtlasQ8IXM7
HPRD11360
IPIIPI00217558   
Protein Interaction databases
DIP (DOE-UCLA)Q8IXM7
IntAct (EBI)Q8IXM7
FunCoupENSG00000182950
BioGRIDODF3L1
STRING (EMBL)ODF3L1
ZODIACODF3L1
Ontologies - Pathways
QuickGOQ8IXM7
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkODF3L1
Atlas of Cancer Signalling NetworkODF3L1
Wikipedia pathwaysODF3L1
Orthology - Evolution
OrthoDB161753
GeneTree (enSembl)ENSG00000182950
Phylogenetic Trees/Animal Genes : TreeFamODF3L1
HOVERGENQ8IXM7
HOGENOMQ8IXM7
Homologs : HomoloGeneODF3L1
Homology/Alignments : Family Browser (UCSC)ODF3L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF3L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF3L1
dbVarODF3L1
ClinVarODF3L1
1000_GenomesODF3L1 
Exome Variant ServerODF3L1
ExAC (Exome Aggregation Consortium)ODF3L1 (select the gene name)
Genetic variants : HAPMAP161753
Genomic Variants (DGV)ODF3L1 [DGVbeta]
DECIPHERODF3L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODF3L1 
Mutations
ICGC Data PortalODF3L1 
TCGA Data PortalODF3L1 
Broad Tumor PortalODF3L1
OASIS PortalODF3L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF3L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF3L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF3L1
DgiDB (Drug Gene Interaction Database)ODF3L1
DoCM (Curated mutations)ODF3L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF3L1 (select a term)
intoGenODF3L1
Cancer3DODF3L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenODF3L1
Genetic Testing Registry ODF3L1
NextProtQ8IXM7 [Medical]
TSGene161753
GENETestsODF3L1
Target ValidationODF3L1
Huge Navigator ODF3L1 [HugePedia]
snp3D : Map Gene to Disease161753
BioCentury BCIQODF3L1
ClinGenODF3L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD161753
Chemical/Pharm GKB GenePA134930463
Clinical trialODF3L1
Miscellaneous
canSAR (ICR)ODF3L1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF3L1
EVEXODF3L1
GoPubMedODF3L1
iHOPODF3L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:33:30 CEST 2017

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