Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ODF3L2 (outer dense fiber of sperm tails 3 like 2)

Identity

Alias_namesC19orf19
chromosome 19 open reading frame 19
Alias_symbol (synonym)FLJ40059
Other alias
HGNC (Hugo) ODF3L2
LocusID (NCBI) 284451
Atlas_Id 71098
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 463346 and ends at 474983 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCAR3 (1p22.1) / ODF3L2 (19p13.3)MED1 (17q12) / ODF3L2 (19p13.3)BCAR3 ODF3L2
MED1 ODF3L2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF3L2   26841
Cards
Entrez_Gene (NCBI)ODF3L2  284451  outer dense fiber of sperm teils 1 |ike 2
AliasesC19orf19
GeneCards (Weizmann)ODF3L2
Ensembl hg19 (Hinxton)ENSG00000181781 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181781 [Gene_View]  chr19:463346-474983 [Contig_View]  ODF3L2 [Vega]
ICGC DataPortalENSG00000181781
TCGA cBioPortalODF3L2
AceView (NCBI)ODF3L2
Genatlas (Paris)ODF3L2
WikiGenes284451
SOURCE (Princeton)ODF3L2
Genetics Home Reference (NIH)ODF3L2
Genomic and cartography
GoldenPath hg38 (UCSC)ODF3L2  -     chr19:463346-474983 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODF3L2  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblODF3L2 - 19p13.3 [CytoView hg19]  ODF3L2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIODF3L2 [Mapview hg19]  ODF3L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA935122 AK097378 AW082140 BC104468 BC104469
RefSeq transcript (Entrez)NM_182577
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODF3L2
Cluster EST : UnigeneHs.104777 [ NCBI ]
CGAP (NCI)Hs.104777
Alternative Splicing GalleryENSG00000181781
Gene ExpressionODF3L2 [ NCBI-GEO ]   ODF3L2 [ EBI - ARRAY_EXPRESS ]   ODF3L2 [ SEEK ]   ODF3L2 [ MEM ]
Gene Expression Viewer (FireBrowse)ODF3L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284451
GTEX Portal (Tissue expression)ODF3L2
Human Protein AtlasENSG00000181781-ODF3L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SX64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SX64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SX64
Splice isoforms : SwissVarQ3SX64
PhosPhoSitePlusQ3SX64
Domains : Interpro (EBI)SHIPPO-rpt   
Domain families : Pfam (Sanger)SHIPPO-rpt (PF07004)   
Domain families : Pfam (NCBI)pfam07004   
Conserved Domain (NCBI)ODF3L2
DMDM Disease mutations284451
Blocks (Seattle)ODF3L2
SuperfamilyQ3SX64
Human Protein Atlas [tissue]ENSG00000181781-ODF3L2 [tissue]
Peptide AtlasQ3SX64
HPRD12700
IPIIPI00166190   IPI00651689   
Protein Interaction databases
DIP (DOE-UCLA)Q3SX64
IntAct (EBI)Q3SX64
FunCoupENSG00000181781
BioGRIDODF3L2
STRING (EMBL)ODF3L2
ZODIACODF3L2
Ontologies - Pathways
QuickGOQ3SX64
Ontology : AmiGOcytoplasmic microtubule  
Ontology : EGO-EBIcytoplasmic microtubule  
NDEx NetworkODF3L2
Atlas of Cancer Signalling NetworkODF3L2
Wikipedia pathwaysODF3L2
Orthology - Evolution
OrthoDB284451
GeneTree (enSembl)ENSG00000181781
Phylogenetic Trees/Animal Genes : TreeFamODF3L2
HOVERGENQ3SX64
HOGENOMQ3SX64
Homologs : HomoloGeneODF3L2
Homology/Alignments : Family Browser (UCSC)ODF3L2
Gene fusions - Rearrangements
Fusion: TCGABCAR3 ODF3L2
Fusion: TCGAMED1 ODF3L2
Fusion: Tumor Portal ODF3L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF3L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF3L2
dbVarODF3L2
ClinVarODF3L2
1000_GenomesODF3L2 
Exome Variant ServerODF3L2
ExAC (Exome Aggregation Consortium)ENSG00000181781
GNOMAD BrowserENSG00000181781
Genetic variants : HAPMAP284451
Genomic Variants (DGV)ODF3L2 [DGVbeta]
DECIPHERODF3L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODF3L2 
Mutations
ICGC Data PortalODF3L2 
TCGA Data PortalODF3L2 
Broad Tumor PortalODF3L2
OASIS PortalODF3L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF3L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF3L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF3L2
DgiDB (Drug Gene Interaction Database)ODF3L2
DoCM (Curated mutations)ODF3L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF3L2 (select a term)
intoGenODF3L2
Cancer3DODF3L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenODF3L2
Genetic Testing Registry ODF3L2
NextProtQ3SX64 [Medical]
TSGene284451
GENETestsODF3L2
Target ValidationODF3L2
Huge Navigator ODF3L2 [HugePedia]
snp3D : Map Gene to Disease284451
BioCentury BCIQODF3L2
ClinGenODF3L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284451
Chemical/Pharm GKB GenePA162398387
Clinical trialODF3L2
Miscellaneous
canSAR (ICR)ODF3L2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF3L2
EVEXODF3L2
GoPubMedODF3L2
iHOPODF3L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:19:48 CET 2017

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