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ODF4 (outer dense fiber of sperm tails 4)

Identity

Alias_symbol (synonym)OPPO1
CT136
Other aliasCT134
HGNC (Hugo) ODF4
LocusID (NCBI) 146852
Atlas_Id 52927
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8339840 and ends at 8346045 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ODF4   19056
Cards
Entrez_Gene (NCBI)ODF4  146852  outer dense fiber of sperm tails 4
AliasesCT134; CT136; OPPO1
GeneCards (Weizmann)ODF4
Ensembl hg19 (Hinxton)ENSG00000184650 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184650 [Gene_View]  chr17:8339840-8346045 [Contig_View]  ODF4 [Vega]
ICGC DataPortalENSG00000184650
TCGA cBioPortalODF4
AceView (NCBI)ODF4
Genatlas (Paris)ODF4
WikiGenes146852
SOURCE (Princeton)ODF4
Genetics Home Reference (NIH)ODF4
Genomic and cartography
GoldenPath hg38 (UCSC)ODF4  -     chr17:8339840-8346045 +  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODF4  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblODF4 - 17p13.1 [CytoView hg19]  ODF4 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIODF4 [Mapview hg19]  ODF4 [Mapview hg38]
OMIM610097   
Gene and transcription
Genbank (Entrez)AB081120 AY237799 BC112010 BC112014 FJ235526
RefSeq transcript (Entrez)NM_001319953 NM_153007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODF4
Cluster EST : UnigeneHs.186045 [ NCBI ]
CGAP (NCI)Hs.186045
Alternative Splicing GalleryENSG00000184650
Gene ExpressionODF4 [ NCBI-GEO ]   ODF4 [ EBI - ARRAY_EXPRESS ]   ODF4 [ SEEK ]   ODF4 [ MEM ]
Gene Expression Viewer (FireBrowse)ODF4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146852
GTEX Portal (Tissue expression)ODF4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M2E3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M2E3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M2E3
Splice isoforms : SwissVarQ2M2E3
PhosPhoSitePlusQ2M2E3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ODF4
DMDM Disease mutations146852
Blocks (Seattle)ODF4
SuperfamilyQ2M2E3
Human Protein AtlasENSG00000184650
Peptide AtlasQ2M2E3
HPRD17658
IPIIPI00216331   
Protein Interaction databases
DIP (DOE-UCLA)Q2M2E3
IntAct (EBI)Q2M2E3
FunCoupENSG00000184650
BioGRIDODF4
STRING (EMBL)ODF4
ZODIACODF4
Ontologies - Pathways
QuickGOQ2M2E3
Ontology : AmiGOouter dense fiber  multicellular organism development  spermatogenesis  integral component of membrane  cell differentiation  
Ontology : EGO-EBIouter dense fiber  multicellular organism development  spermatogenesis  integral component of membrane  cell differentiation  
NDEx NetworkODF4
Atlas of Cancer Signalling NetworkODF4
Wikipedia pathwaysODF4
Orthology - Evolution
OrthoDB146852
GeneTree (enSembl)ENSG00000184650
Phylogenetic Trees/Animal Genes : TreeFamODF4
HOVERGENQ2M2E3
HOGENOMQ2M2E3
Homologs : HomoloGeneODF4
Homology/Alignments : Family Browser (UCSC)ODF4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODF4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODF4
dbVarODF4
ClinVarODF4
1000_GenomesODF4 
Exome Variant ServerODF4
ExAC (Exome Aggregation Consortium)ODF4 (select the gene name)
Genetic variants : HAPMAP146852
Genomic Variants (DGV)ODF4 [DGVbeta]
DECIPHERODF4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODF4 
Mutations
ICGC Data PortalODF4 
TCGA Data PortalODF4 
Broad Tumor PortalODF4
OASIS PortalODF4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICODF4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDODF4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ODF4
DgiDB (Drug Gene Interaction Database)ODF4
DoCM (Curated mutations)ODF4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODF4 (select a term)
intoGenODF4
Cancer3DODF4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610097   
Orphanet
MedgenODF4
Genetic Testing Registry ODF4
NextProtQ2M2E3 [Medical]
TSGene146852
GENETestsODF4
Target ValidationODF4
Huge Navigator ODF4 [HugePedia]
snp3D : Map Gene to Disease146852
BioCentury BCIQODF4
ClinGenODF4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146852
Chemical/Pharm GKB GenePA134978853
Clinical trialODF4
Miscellaneous
canSAR (ICR)ODF4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODF4
EVEXODF4
GoPubMedODF4
iHOPODF4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:09:40 CEST 2017

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