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ODR4 (odr-4 GPCR localization factor homolog)

Identity

Other aliasC1orf27
TTG1
odr-4
HGNC (Hugo) ODR4
LocusID (NCBI) 54953
Atlas_Id 80622
Location 1q31.1  [Link to chromosome band 1q31]
Location_base_pair Starts at 186375758 and ends at 186421371 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ODR4   24299
Cards
Entrez_Gene (NCBI)ODR4  54953  odr-4 GPCR localization factor homolog
AliasesC1orf27; TTG1; odr-4
GeneCards (Weizmann)ODR4
Ensembl hg19 (Hinxton)ENSG00000157181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157181 [Gene_View]  ENSG00000157181 [Sequence]  chr1:186375758-186421371 [Contig_View]  ODR4 [Vega]
ICGC DataPortalENSG00000157181
TCGA cBioPortalODR4
AceView (NCBI)ODR4
Genatlas (Paris)ODR4
WikiGenes54953
SOURCE (Princeton)ODR4
Genetics Home Reference (NIH)ODR4
Genomic and cartography
GoldenPath hg38 (UCSC)ODR4  -     chr1:186375758-186421371 +  1q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ODR4  -     1q31.1   [Description]    (hg19-Feb_2009)
GoldenPathODR4 - 1q31.1 [CytoView hg19]  ODR4 - 1q31.1 [CytoView hg38]
ImmunoBaseENSG00000157181
Mapping of homologs : NCBIODR4 [Mapview hg19]  ODR4 [Mapview hg38]
OMIM609335   
Gene and transcription
Genbank (Entrez)AF214011 AK000171 AK000512 AK026086 AK298107
RefSeq transcript (Entrez)NM_001164245 NM_001164246 NM_017847
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ODR4
Cluster EST : UnigeneHs.371210 [ NCBI ]
CGAP (NCI)Hs.371210
Alternative Splicing GalleryENSG00000157181
Gene ExpressionODR4 [ NCBI-GEO ]   ODR4 [ EBI - ARRAY_EXPRESS ]   ODR4 [ SEEK ]   ODR4 [ MEM ]
Gene Expression Viewer (FireBrowse)ODR4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54953
GTEX Portal (Tissue expression)ODR4
Human Protein AtlasENSG00000157181-ODR4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SWX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SWX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SWX8
Splice isoforms : SwissVarQ5SWX8
PhosPhoSitePlusQ5SWX8
Domains : Interpro (EBI)ODR-4-like   
Domain families : Pfam (Sanger)ODR4-like (PF14778)   
Domain families : Pfam (NCBI)pfam14778   
Conserved Domain (NCBI)ODR4
DMDM Disease mutations54953
Blocks (Seattle)ODR4
SuperfamilyQ5SWX8
Human Protein Atlas [tissue]ENSG00000157181-ODR4 [tissue]
Peptide AtlasQ5SWX8
IPIIPI00386043   IPI00855720   IPI00855707   IPI00940977   IPI00910095   
Protein Interaction databases
DIP (DOE-UCLA)Q5SWX8
IntAct (EBI)Q5SWX8
FunCoupENSG00000157181
BioGRIDODR4
STRING (EMBL)ODR4
ZODIACODR4
Ontologies - Pathways
QuickGOQ5SWX8
Ontology : AmiGOprotein localization  integral component of membrane  
Ontology : EGO-EBIprotein localization  integral component of membrane  
NDEx NetworkODR4
Atlas of Cancer Signalling NetworkODR4
Wikipedia pathwaysODR4
Orthology - Evolution
OrthoDB54953
GeneTree (enSembl)ENSG00000157181
Phylogenetic Trees/Animal Genes : TreeFamODR4
HOGENOMQ5SWX8
Homologs : HomoloGeneODR4
Homology/Alignments : Family Browser (UCSC)ODR4
Gene fusions - Rearrangements
Fusion : QuiverODR4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerODR4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ODR4
dbVarODR4
ClinVarODR4
1000_GenomesODR4 
Exome Variant ServerODR4
ExAC (Exome Aggregation Consortium)ENSG00000157181
GNOMAD BrowserENSG00000157181
Varsome BrowserODR4
Genetic variants : HAPMAP54953
Genomic Variants (DGV)ODR4 [DGVbeta]
DECIPHERODR4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisODR4 
Mutations
ICGC Data PortalODR4 
TCGA Data PortalODR4 
Broad Tumor PortalODR4
OASIS PortalODR4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDODR4
BioMutasearch ODR4
DgiDB (Drug Gene Interaction Database)ODR4
DoCM (Curated mutations)ODR4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ODR4 (select a term)
intoGenODR4
Cancer3DODR4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609335   
Orphanet
DisGeNETODR4
MedgenODR4
Genetic Testing Registry ODR4
NextProtQ5SWX8 [Medical]
TSGene54953
GENETestsODR4
Target ValidationODR4
Huge Navigator ODR4 [HugePedia]
snp3D : Map Gene to Disease54953
BioCentury BCIQODR4
ClinGenODR4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54953
Chemical/Pharm GKB GenePA134934744
Clinical trialODR4
Miscellaneous
canSAR (ICR)ODR4 (select the gene name)
DataMed IndexODR4
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineODR4
EVEXODR4
GoPubMedODR4
iHOPODR4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 7 17:41:02 CEST 2019

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