Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OGA (O-GlcNAcase)

Identity

Other aliasMEA5
MGEA5
NCOAT
HGNC (Hugo) OGA
LocusID (NCBI) 10724
Atlas_Id 57432
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 101784443 and ends at 101818465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OGA   7056
Cards
Entrez_Gene (NCBI)OGA  10724  O-GlcNAcase
AliasesMEA5; MGEA5; NCOAT
GeneCards (Weizmann)OGA
Ensembl hg19 (Hinxton)ENSG00000198408 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198408 [Gene_View]  ENSG00000198408 [Sequence]  chr10:101784443-101818465 [Contig_View]  OGA [Vega]
ICGC DataPortalENSG00000198408
TCGA cBioPortalOGA
AceView (NCBI)OGA
Genatlas (Paris)OGA
WikiGenes10724
SOURCE (Princeton)OGA
Genetics Home Reference (NIH)OGA
Genomic and cartography
GoldenPath hg38 (UCSC)OGA  -     chr10:101784443-101818465 -  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGA  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblOGA - 10q24.32 [CytoView hg19]  OGA - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBIOGA [Mapview hg19]  OGA [Mapview hg38]
OMIM604039   
Gene and transcription
Genbank (Entrez)AB014579 AF036144 AF307332 AK000988 AK002091
RefSeq transcript (Entrez)NM_001142434 NM_012215
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGA
Cluster EST : UnigeneHs.500842 [ NCBI ]
CGAP (NCI)Hs.500842
Alternative Splicing GalleryENSG00000198408
Gene ExpressionOGA [ NCBI-GEO ]   OGA [ EBI - ARRAY_EXPRESS ]   OGA [ SEEK ]   OGA [ MEM ]
Gene Expression Viewer (FireBrowse)OGA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10724
GTEX Portal (Tissue expression)OGA
Human Protein AtlasENSG00000198408-OGA [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60502   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60502  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60502
Splice isoforms : SwissVarO60502
PhosPhoSitePlusO60502
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    Beta-N-acetylglucosaminidase    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)NAGidase (PF07555)   
Domain families : Pfam (NCBI)pfam07555   
Conserved Domain (NCBI)OGA
DMDM Disease mutations10724
Blocks (Seattle)OGA
PDB (SRS)2YDQ    5M7R    5M7S    5M7T    5M7U    5TKE    5UHK    5UHL    5UHO    5UHP    5UN8    5UN9    5VVO    5VVT    5VVU    5VVV    5VVX   
PDB (PDBSum)2YDQ    5M7R    5M7S    5M7T    5M7U    5TKE    5UHK    5UHL    5UHO    5UHP    5UN8    5UN9    5VVO    5VVT    5VVU    5VVV    5VVX   
PDB (IMB)2YDQ    5M7R    5M7S    5M7T    5M7U    5TKE    5UHK    5UHL    5UHO    5UHP    5UN8    5UN9    5VVO    5VVT    5VVU    5VVV    5VVX   
PDB (RSDB)2YDQ    5M7R    5M7S    5M7T    5M7U    5TKE    5UHK    5UHL    5UHO    5UHP    5UN8    5UN9    5VVO    5VVT    5VVU    5VVV    5VVX   
Structural Biology KnowledgeBase2YDQ    5M7R    5M7S    5M7T    5M7U    5TKE    5UHK    5UHL    5UHO    5UHP    5UN8    5UN9    5VVO    5VVT    5VVU    5VVV    5VVX   
SCOP (Structural Classification of Proteins)2YDQ    5M7R    5M7S    5M7T    5M7U    5TKE    5UHK    5UHL    5UHO    5UHP    5UN8    5UN9    5VVO    5VVT    5VVU    5VVV    5VVX   
CATH (Classification of proteins structures)2YDQ    5M7R    5M7S    5M7T    5M7U    5TKE    5UHK    5UHL    5UHO    5UHP    5UN8    5UN9    5VVO    5VVT    5VVU    5VVV    5VVX   
SuperfamilyO60502
Human Protein Atlas [tissue]ENSG00000198408-OGA [tissue]
Peptide AtlasO60502
IPIIPI00465449   IPI00911066   IPI00181391   IPI00477231   IPI00640090   
Protein Interaction databases
DIP (DOE-UCLA)O60502
IntAct (EBI)O60502
FunCoupENSG00000198408
BioGRIDOGA
STRING (EMBL)OGA
ZODIACOGA
Ontologies - Pathways
QuickGOO60502
Ontology : AmiGOhyalurononglucosaminidase activity  nucleus  cytosol  N-acetylglucosamine metabolic process  protein O-linked glycosylation  glycoprotein catabolic process  protein deglycosylation  glycoprotein metabolic process  membrane  viral process  beta-N-acetylglucosaminidase activity  beta-N-acetylglucosaminidase activity  [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-threonine O-N-acetyl-alpha-D-glucosaminase activity  [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine O-N-acetyl-alpha-D-glucosaminase activity  [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine/L-threonine O-N-acetyl-alpha-D-glucosaminase activity  
Ontology : EGO-EBIhyalurononglucosaminidase activity  nucleus  cytosol  N-acetylglucosamine metabolic process  protein O-linked glycosylation  glycoprotein catabolic process  protein deglycosylation  glycoprotein metabolic process  membrane  viral process  beta-N-acetylglucosaminidase activity  beta-N-acetylglucosaminidase activity  [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-threonine O-N-acetyl-alpha-D-glucosaminase activity  [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine O-N-acetyl-alpha-D-glucosaminase activity  [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine/L-threonine O-N-acetyl-alpha-D-glucosaminase activity  
NDEx NetworkOGA
Atlas of Cancer Signalling NetworkOGA
Wikipedia pathwaysOGA
Orthology - Evolution
OrthoDB10724
GeneTree (enSembl)ENSG00000198408
Phylogenetic Trees/Animal Genes : TreeFamOGA
HOVERGENO60502
HOGENOMO60502
Homologs : HomoloGeneOGA
Homology/Alignments : Family Browser (UCSC)OGA
Gene fusions - Rearrangements
Fusion : QuiverOGA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGA
dbVarOGA
ClinVarOGA
1000_GenomesOGA 
Exome Variant ServerOGA
ExAC (Exome Aggregation Consortium)ENSG00000198408
GNOMAD BrowserENSG00000198408
Varsome BrowserOGA
Genetic variants : HAPMAP10724
Genomic Variants (DGV)OGA [DGVbeta]
DECIPHEROGA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGA 
Mutations
ICGC Data PortalOGA 
TCGA Data PortalOGA 
Broad Tumor PortalOGA
OASIS PortalOGA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOGA
BioMutasearch OGA
DgiDB (Drug Gene Interaction Database)OGA
DoCM (Curated mutations)OGA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGA (select a term)
intoGenOGA
Cancer3DOGA(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604039   
Orphanet
DisGeNETOGA
MedgenOGA
Genetic Testing Registry OGA
NextProtO60502 [Medical]
TSGene10724
GENETestsOGA
Target ValidationOGA
Huge Navigator OGA [HugePedia]
snp3D : Map Gene to Disease10724
BioCentury BCIQOGA
ClinGenOGA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10724
Chemical/Pharm GKB GenePA30787
Clinical trialOGA
Miscellaneous
canSAR (ICR)OGA (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGA
EVEXOGA
GoPubMedOGA
iHOPOGA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:27:34 CET 2018

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