Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OGDHL (oxoglutarate dehydrogenase-like)

Identity

Alias_symbol (synonym)FLJ10851
Other alias-
HGNC (Hugo) OGDHL
LocusID (NCBI) 55753
Atlas_Id 53296
Location 10q11.23  [Link to chromosome band 10q11]
Location_base_pair Starts at 50942687 and ends at 50970425 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
OGDHL (10q11.23) / OGDHL (10q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OGDHL   25590
Cards
Entrez_Gene (NCBI)OGDHL  55753  oxoglutarate dehydrogenase-like
Aliases
GeneCards (Weizmann)OGDHL
Ensembl hg19 (Hinxton)ENSG00000197444 [Gene_View]  chr10:50942687-50970425 [Contig_View]  OGDHL [Vega]
Ensembl hg38 (Hinxton)ENSG00000197444 [Gene_View]  chr10:50942687-50970425 [Contig_View]  OGDHL [Vega]
ICGC DataPortalENSG00000197444
TCGA cBioPortalOGDHL
AceView (NCBI)OGDHL
Genatlas (Paris)OGDHL
WikiGenes55753
SOURCE (Princeton)OGDHL
Genetics Home Reference (NIH)OGDHL
Genomic and cartography
GoldenPath hg19 (UCSC)OGDHL  -     chr10:50942687-50970425 -  10q11.23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OGDHL  -     10q11.23   [Description]    (hg38-Dec_2013)
EnsemblOGDHL - 10q11.23 [CytoView hg19]  OGDHL - 10q11.23 [CytoView hg38]
Mapping of homologs : NCBIOGDHL [Mapview hg19]  OGDHL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB033116 AK001713 AK055817 AK225558 AK290226
RefSeq transcript (Entrez)NM_001143996 NM_001143997 NM_018245
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)OGDHL
Cluster EST : UnigeneHs.17860 [ NCBI ]
CGAP (NCI)Hs.17860
Alternative Splicing GalleryENSG00000197444
Gene ExpressionOGDHL [ NCBI-GEO ]   OGDHL [ EBI - ARRAY_EXPRESS ]   OGDHL [ SEEK ]   OGDHL [ MEM ]
Gene Expression Viewer (FireBrowse)OGDHL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55753
GTEX Portal (Tissue expression)OGDHL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULD0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULD0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULD0
Splice isoforms : SwissVarQ9ULD0
Catalytic activity : Enzyme1.2.4.- [ Enzyme-Expasy ]   1.2.4.-1.2.4.- [ IntEnz-EBI ]   1.2.4.- [ BRENDA ]   1.2.4.- [ KEGG ]   
PhosPhoSitePlusQ9ULD0
Domains : Interpro (EBI)2-oxogl_dehyd_N    2oxoglutarate_DH_E1    DH_E1    KGD_C    THDP-binding    Transketolase-like_Pyr-bd   
Domain families : Pfam (Sanger)2-oxogl_dehyd_N (PF16078)    E1_dh (PF00676)    OxoGdeHyase_C (PF16870)    Transket_pyr (PF02779)   
Domain families : Pfam (NCBI)pfam16078    pfam00676    pfam16870    pfam02779   
Domain families : Smart (EMBL)Transket_pyr (SM00861)  
Conserved Domain (NCBI)OGDHL
DMDM Disease mutations55753
Blocks (Seattle)OGDHL
SuperfamilyQ9ULD0
Human Protein AtlasENSG00000197444
Peptide AtlasQ9ULD0
HPRD07704
IPIIPI00643720   IPI00921408   IPI00921283   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULD0
IntAct (EBI)Q9ULD0
FunCoupENSG00000197444
BioGRIDOGDHL
STRING (EMBL)OGDHL
ZODIACOGDHL
Ontologies - Pathways
QuickGOQ9ULD0
Ontology : AmiGOoxoglutarate dehydrogenase (succinyl-transferring) activity  protein binding  mitochondrion  mitochondrial matrix  cytosol  glycolytic process  tricarboxylic acid cycle  thiamine pyrophosphate binding  oxoglutarate dehydrogenase complex  metal ion binding  
Ontology : EGO-EBIoxoglutarate dehydrogenase (succinyl-transferring) activity  protein binding  mitochondrion  mitochondrial matrix  cytosol  glycolytic process  tricarboxylic acid cycle  thiamine pyrophosphate binding  oxoglutarate dehydrogenase complex  metal ion binding  
Pathways : KEGGCitrate cycle (TCA cycle)    Lysine degradation    Tryptophan metabolism   
NDEx NetworkOGDHL
Atlas of Cancer Signalling NetworkOGDHL
Wikipedia pathwaysOGDHL
Orthology - Evolution
OrthoDB55753
GeneTree (enSembl)ENSG00000197444
Phylogenetic Trees/Animal Genes : TreeFamOGDHL
HOVERGENQ9ULD0
HOGENOMQ9ULD0
Homologs : HomoloGeneOGDHL
Homology/Alignments : Family Browser (UCSC)OGDHL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGDHL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGDHL
dbVarOGDHL
ClinVarOGDHL
1000_GenomesOGDHL 
Exome Variant ServerOGDHL
ExAC (Exome Aggregation Consortium)OGDHL (select the gene name)
Genetic variants : HAPMAP55753
Genomic Variants (DGV)OGDHL [DGVbeta]
DECIPHER (Syndromes)10:50942687-50970425  ENSG00000197444
CONAN: Copy Number AnalysisOGDHL 
Mutations
ICGC Data PortalOGDHL 
TCGA Data PortalOGDHL 
Broad Tumor PortalOGDHL
OASIS PortalOGDHL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOGDHL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOGDHL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch OGDHL
DgiDB (Drug Gene Interaction Database)OGDHL
DoCM (Curated mutations)OGDHL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGDHL (select a term)
intoGenOGDHL
Cancer3DOGDHL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOGDHL
Genetic Testing Registry OGDHL
NextProtQ9ULD0 [Medical]
TSGene55753
GENETestsOGDHL
Huge Navigator OGDHL [HugePedia]
snp3D : Map Gene to Disease55753
BioCentury BCIQOGDHL
ClinGenOGDHL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55753
Chemical/Pharm GKB GenePA134878907
Clinical trialOGDHL
Miscellaneous
canSAR (ICR)OGDHL (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGDHL
EVEXOGDHL
GoPubMedOGDHL
iHOPOGDHL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:45 CET 2017

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