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OGFOD1 (2-oxoglutarate and iron dependent oxygenase domain containing 1)

Identity

Alias_namestermination and polyadenylation 1
homolog (S. cerevisiae)
Alias_symbol (synonym)KIAA1612
FLJ10826
TPA1
Other alias
HGNC (Hugo) OGFOD1
LocusID (NCBI) 55239
Atlas_Id 55813
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 56451480 and ends at 56477495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
OGFOD1 (16q12.2) / OGFOD1 (16q12.2)OGFOD1 (16q12.2) / PARP14 (3q21.1)OGFOD1 (16q12.2) / RPS18 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OGFOD1   25585
Cards
Entrez_Gene (NCBI)OGFOD1  55239  2-oxoglutarate and iron dependent oxygenase domain containing 1
AliasesTPA1
GeneCards (Weizmann)OGFOD1
Ensembl hg19 (Hinxton)ENSG00000087263 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087263 [Gene_View]  chr16:56451480-56477495 [Contig_View]  OGFOD1 [Vega]
ICGC DataPortalENSG00000087263
TCGA cBioPortalOGFOD1
AceView (NCBI)OGFOD1
Genatlas (Paris)OGFOD1
WikiGenes55239
SOURCE (Princeton)OGFOD1
Genetics Home Reference (NIH)OGFOD1
Genomic and cartography
GoldenPath hg38 (UCSC)OGFOD1  -     chr16:56451480-56477495 +  16q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGFOD1  -     16q13   [Description]    (hg19-Feb_2009)
EnsemblOGFOD1 - 16q13 [CytoView hg19]  OGFOD1 - 16q13 [CytoView hg38]
Mapping of homologs : NCBIOGFOD1 [Mapview hg19]  OGFOD1 [Mapview hg38]
OMIM615857   
Gene and transcription
Genbank (Entrez)AB046832 AK001688 AK022130 AK022752 AK024314
RefSeq transcript (Entrez)NM_001324357 NM_001324358 NM_001324359 NM_001324360 NM_001324361 NM_001324362 NM_001324363 NM_018233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGFOD1
Cluster EST : UnigeneHs.231883 [ NCBI ]
CGAP (NCI)Hs.231883
Alternative Splicing GalleryENSG00000087263
Gene ExpressionOGFOD1 [ NCBI-GEO ]   OGFOD1 [ EBI - ARRAY_EXPRESS ]   OGFOD1 [ SEEK ]   OGFOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)OGFOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55239
GTEX Portal (Tissue expression)OGFOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N543
Splice isoforms : SwissVarQ8N543
Catalytic activity : Enzyme1.14.11.- [ Enzyme-Expasy ]   1.14.11.-1.14.11.- [ IntEnz-EBI ]   1.14.11.- [ BRENDA ]   1.14.11.- [ KEGG ]   
PhosPhoSitePlusQ8N543
Domaine pattern : Prosite (Expaxy)FE2OG_OXY (PS51471)   
Domains : Interpro (EBI)Oxoglu/Fe-dep_dioxygenase    Oxoglutarate/Fe-dep_Oase_C    Pro_4_hyd_alph   
Domain families : Pfam (Sanger)Ofd1_CTDD (PF10637)   
Domain families : Pfam (NCBI)pfam10637   
Domain families : Smart (EMBL)P4Hc (SM00702)  
Conserved Domain (NCBI)OGFOD1
DMDM Disease mutations55239
Blocks (Seattle)OGFOD1
PDB (SRS)4NHX    4NHY   
PDB (PDBSum)4NHX    4NHY   
PDB (IMB)4NHX    4NHY   
PDB (RSDB)4NHX    4NHY   
Structural Biology KnowledgeBase4NHX    4NHY   
SCOP (Structural Classification of Proteins)4NHX    4NHY   
CATH (Classification of proteins structures)4NHX    4NHY   
SuperfamilyQ8N543
Human Protein AtlasENSG00000087263
Peptide AtlasQ8N543
HPRD08553
IPIIPI00170429   IPI00402205   IPI01015469   
Protein Interaction databases
DIP (DOE-UCLA)Q8N543
IntAct (EBI)Q8N543
FunCoupENSG00000087263
BioGRIDOGFOD1
STRING (EMBL)OGFOD1
ZODIACOGFOD1
Ontologies - Pathways
QuickGOQ8N543
Ontology : AmiGOiron ion binding  nucleus  cytosol  regulation of translational termination  cell proliferation  cytoplasmic stress granule  protein hydroxylation  peptidyl-proline hydroxylation  L-ascorbic acid binding  peptidyl-proline dioxygenase activity  peptidyl-proline 3-dioxygenase activity  stress granule assembly  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  nucleus  cytosol  regulation of translational termination  cell proliferation  cytoplasmic stress granule  protein hydroxylation  peptidyl-proline hydroxylation  L-ascorbic acid binding  peptidyl-proline dioxygenase activity  peptidyl-proline 3-dioxygenase activity  stress granule assembly  oxidation-reduction process  
NDEx NetworkOGFOD1
Atlas of Cancer Signalling NetworkOGFOD1
Wikipedia pathwaysOGFOD1
Orthology - Evolution
OrthoDB55239
GeneTree (enSembl)ENSG00000087263
Phylogenetic Trees/Animal Genes : TreeFamOGFOD1
HOVERGENQ8N543
HOGENOMQ8N543
Homologs : HomoloGeneOGFOD1
Homology/Alignments : Family Browser (UCSC)OGFOD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGFOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGFOD1
dbVarOGFOD1
ClinVarOGFOD1
1000_GenomesOGFOD1 
Exome Variant ServerOGFOD1
ExAC (Exome Aggregation Consortium)OGFOD1 (select the gene name)
Genetic variants : HAPMAP55239
Genomic Variants (DGV)OGFOD1 [DGVbeta]
DECIPHEROGFOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGFOD1 
Mutations
ICGC Data PortalOGFOD1 
TCGA Data PortalOGFOD1 
Broad Tumor PortalOGFOD1
OASIS PortalOGFOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOGFOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOGFOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OGFOD1
DgiDB (Drug Gene Interaction Database)OGFOD1
DoCM (Curated mutations)OGFOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGFOD1 (select a term)
intoGenOGFOD1
Cancer3DOGFOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615857   
Orphanet
MedgenOGFOD1
Genetic Testing Registry OGFOD1
NextProtQ8N543 [Medical]
TSGene55239
GENETestsOGFOD1
Target ValidationOGFOD1
Huge Navigator OGFOD1 [HugePedia]
snp3D : Map Gene to Disease55239
BioCentury BCIQOGFOD1
ClinGenOGFOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55239
Chemical/Pharm GKB GenePA143485568
Clinical trialOGFOD1
Miscellaneous
canSAR (ICR)OGFOD1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGFOD1
EVEXOGFOD1
GoPubMedOGFOD1
iHOPOGFOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:02:15 CEST 2017

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