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OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2)

Identity

Alias_names2-oxoglutarate and iron-dependent oxygenase domain containing 2
Alias_symbol (synonym)FLJ13491
FLJ37501
Other alias-
HGNC (Hugo) OGFOD2
LocusID (NCBI) 79676
Atlas_Id 71103
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122975203 and ends at 122980041 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARF3 (12q13.12) / OGFOD2 (12q24.31)RPL4 (15q22.31) / OGFOD2 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OGFOD2   25823
Cards
Entrez_Gene (NCBI)OGFOD2  79676  2-oxoglutarate and iron dependent oxygenase domain containing 2
Aliases
GeneCards (Weizmann)OGFOD2
Ensembl hg19 (Hinxton)ENSG00000111325 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000111325 [Gene_View]  chr12:122975203-122980041 [Contig_View]  OGFOD2 [Vega]
ICGC DataPortalENSG00000111325
TCGA cBioPortalOGFOD2
AceView (NCBI)OGFOD2
Genatlas (Paris)OGFOD2
WikiGenes79676
SOURCE (Princeton)OGFOD2
Genetics Home Reference (NIH)OGFOD2
Genomic and cartography
GoldenPath hg38 (UCSC)OGFOD2  -     chr12:122975203-122980041 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGFOD2  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblOGFOD2 - 12q24.31 [CytoView hg19]  OGFOD2 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIOGFOD2 [Mapview hg19]  OGFOD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023553 AK094820 AK095481 AK303095 BC009181
RefSeq transcript (Entrez)NM_001304833 NM_001304834 NM_001304835 NM_001304836 NM_001304837 NM_001304838 NM_024623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGFOD2
Cluster EST : UnigeneHs.524817 [ NCBI ]
CGAP (NCI)Hs.524817
Alternative Splicing GalleryENSG00000111325
Gene ExpressionOGFOD2 [ NCBI-GEO ]   OGFOD2 [ EBI - ARRAY_EXPRESS ]   OGFOD2 [ SEEK ]   OGFOD2 [ MEM ]
Gene Expression Viewer (FireBrowse)OGFOD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79676
GTEX Portal (Tissue expression)OGFOD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6N063   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6N063  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6N063
Splice isoforms : SwissVarQ6N063
PhosPhoSitePlusQ6N063
Domaine pattern : Prosite (Expaxy)FE2OG_OXY (PS51471)   
Domains : Interpro (EBI)Oxoglu/Fe-dep_dioxygenase    Pro_4_hyd_alph   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)P4Hc (SM00702)  
Conserved Domain (NCBI)OGFOD2
DMDM Disease mutations79676
Blocks (Seattle)OGFOD2
SuperfamilyQ6N063
Human Protein AtlasENSG00000111325
Peptide AtlasQ6N063
HPRD07829
IPIIPI00002458   IPI00795704   IPI00847506   IPI00794111   IPI01018903   IPI01010230   IPI00908687   
Protein Interaction databases
DIP (DOE-UCLA)Q6N063
IntAct (EBI)Q6N063
FunCoupENSG00000111325
BioGRIDOGFOD2
STRING (EMBL)OGFOD2
ZODIACOGFOD2
Ontologies - Pathways
QuickGOQ6N063
Ontology : AmiGOiron ion binding  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  L-ascorbic acid binding  dioxygenase activity  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  L-ascorbic acid binding  dioxygenase activity  oxidation-reduction process  
NDEx NetworkOGFOD2
Atlas of Cancer Signalling NetworkOGFOD2
Wikipedia pathwaysOGFOD2
Orthology - Evolution
OrthoDB79676
GeneTree (enSembl)ENSG00000111325
Phylogenetic Trees/Animal Genes : TreeFamOGFOD2
HOVERGENQ6N063
HOGENOMQ6N063
Homologs : HomoloGeneOGFOD2
Homology/Alignments : Family Browser (UCSC)OGFOD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGFOD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGFOD2
dbVarOGFOD2
ClinVarOGFOD2
1000_GenomesOGFOD2 
Exome Variant ServerOGFOD2
ExAC (Exome Aggregation Consortium)OGFOD2 (select the gene name)
Genetic variants : HAPMAP79676
Genomic Variants (DGV)OGFOD2 [DGVbeta]
DECIPHEROGFOD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGFOD2 
Mutations
ICGC Data PortalOGFOD2 
TCGA Data PortalOGFOD2 
Broad Tumor PortalOGFOD2
OASIS PortalOGFOD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOGFOD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOGFOD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OGFOD2
DgiDB (Drug Gene Interaction Database)OGFOD2
DoCM (Curated mutations)OGFOD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGFOD2 (select a term)
intoGenOGFOD2
Cancer3DOGFOD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOGFOD2
Genetic Testing Registry OGFOD2
NextProtQ6N063 [Medical]
TSGene79676
GENETestsOGFOD2
Huge Navigator OGFOD2 [HugePedia]
snp3D : Map Gene to Disease79676
BioCentury BCIQOGFOD2
ClinGenOGFOD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79676
Chemical/Pharm GKB GenePA143485569
Clinical trialOGFOD2
Miscellaneous
canSAR (ICR)OGFOD2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGFOD2
EVEXOGFOD2
GoPubMedOGFOD2
iHOPOGFOD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:50 CEST 2017

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