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OGFOD3 (2-oxoglutarate and iron dependent oxygenase domain containing 3)

Identity

Alias (NCBI)C17orf101
HGNC (Hugo) OGFOD3
HGNC Alias symbFLJ22222
HGNC Previous nameC17orf101
HGNC Previous namechromosome 17 open reading frame 101
 2-oxoglutarate and iron-dependent oxygenase domain containing 3
LocusID (NCBI) 79701
Atlas_Id 71104
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82389210 and ends at 82418637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OGFOD3 (17q25.3) / WDR45B (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OGFOD3   26174
Cards
Entrez_Gene (NCBI)OGFOD3    2-oxoglutarate and iron dependent oxygenase domain containing 3
AliasesC17orf101
GeneCards (Weizmann)OGFOD3
Ensembl hg19 (Hinxton)ENSG00000181396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181396 [Gene_View]  ENSG00000181396 [Sequence]  chr17:82389210-82418637 [Contig_View]  OGFOD3 [Vega]
ICGC DataPortalENSG00000181396
TCGA cBioPortalOGFOD3
AceView (NCBI)OGFOD3
Genatlas (Paris)OGFOD3
SOURCE (Princeton)OGFOD3
Genetics Home Reference (NIH)OGFOD3
Genomic and cartography
GoldenPath hg38 (UCSC)OGFOD3  -     chr17:82389210-82418637 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGFOD3  -     17q25.3   [Description]    (hg19-Feb_2009)
GoldenPathOGFOD3 - 17q25.3 [CytoView hg19]  OGFOD3 - 17q25.3 [CytoView hg38]
ImmunoBaseENSG00000181396
genome Data Viewer NCBIOGFOD3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK025875 AK311057 BC008897 BC009297 BC023602
RefSeq transcript (Entrez)NM_024648 NM_175902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGFOD3
Alternative Splicing GalleryENSG00000181396
Gene ExpressionOGFOD3 [ NCBI-GEO ]   OGFOD3 [ EBI - ARRAY_EXPRESS ]   OGFOD3 [ SEEK ]   OGFOD3 [ MEM ]
Gene Expression Viewer (FireBrowse)OGFOD3 [ Firebrowse - Broad ]
GenevisibleExpression of OGFOD3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79701
GTEX Portal (Tissue expression)OGFOD3
Human Protein AtlasENSG00000181396-OGFOD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PK18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PK18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PK18
Splice isoforms : SwissVarQ6PK18
PhosPhoSitePlusQ6PK18
Domaine pattern : Prosite (Expaxy)FE2OG_OXY (PS51471)   
Domains : Interpro (EBI)OGFOD3    Oxoglu/Fe-dep_dioxygenase    Pro_4_hyd_alph   
Domain families : Pfam (Sanger)2OG-FeII_Oxy_3 (PF13640)   
Domain families : Pfam (NCBI)pfam13640   
Domain families : Smart (EMBL)P4Hc (SM00702)  
Conserved Domain (NCBI)OGFOD3
Blocks (Seattle)OGFOD3
SuperfamilyQ6PK18
Human Protein Atlas [tissue]ENSG00000181396-OGFOD3 [tissue]
Peptide AtlasQ6PK18
HPRD13386
IPIIPI00002884   IPI00217869   
Protein Interaction databases
DIP (DOE-UCLA)Q6PK18
IntAct (EBI)Q6PK18
BioGRIDOGFOD3
STRING (EMBL)OGFOD3
ZODIACOGFOD3
Ontologies - Pathways
QuickGOQ6PK18
Ontology : AmiGOiron ion binding  membrane  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  L-ascorbic acid binding  dioxygenase activity  oxidation-reduction process  
Ontology : EGO-EBIiron ion binding  membrane  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  L-ascorbic acid binding  dioxygenase activity  oxidation-reduction process  
NDEx NetworkOGFOD3
Atlas of Cancer Signalling NetworkOGFOD3
Wikipedia pathwaysOGFOD3
Orthology - Evolution
OrthoDB79701
GeneTree (enSembl)ENSG00000181396
Phylogenetic Trees/Animal Genes : TreeFamOGFOD3
HOGENOMQ6PK18
Homologs : HomoloGeneOGFOD3
Homology/Alignments : Family Browser (UCSC)OGFOD3
Gene fusions - Rearrangements
Fusion : QuiverOGFOD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGFOD3 [hg38]
dbVarOGFOD3
ClinVarOGFOD3
MonarchOGFOD3
1000_GenomesOGFOD3 
Exome Variant ServerOGFOD3
GNOMAD BrowserENSG00000181396
Varsome BrowserOGFOD3
Genomic Variants (DGV)OGFOD3 [DGVbeta]
DECIPHEROGFOD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGFOD3 
Mutations
ICGC Data PortalOGFOD3 
TCGA Data PortalOGFOD3 
Broad Tumor PortalOGFOD3
OASIS PortalOGFOD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOGFOD3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOGFOD3
Mutations and Diseases : HGMDOGFOD3
BioMutasearch OGFOD3
DgiDB (Drug Gene Interaction Database)OGFOD3
DoCM (Curated mutations)OGFOD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGFOD3 (select a term)
intoGenOGFOD3
Cancer3DOGFOD3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOGFOD3
MedgenOGFOD3
Genetic Testing Registry OGFOD3
NextProtQ6PK18 [Medical]
GENETestsOGFOD3
Target ValidationOGFOD3
Huge Navigator OGFOD3 [HugePedia]
ClinGenOGFOD3
Clinical trials, drugs, therapy
MyCancerGenomeOGFOD3
Protein Interactions : CTD
Pharm GKB GenePA164716907
Clinical trialOGFOD3
Miscellaneous
canSAR (ICR)OGFOD3 (select the gene name)
HarmonizomeOGFOD3
DataMed IndexOGFOD3
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGFOD3
EVEXOGFOD3
GoPubMedOGFOD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:19:54 CET 2020
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