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OGFOD3 (2-oxoglutarate and iron dependent oxygenase domain containing 3)

Identity

Alias_namesC17orf101
chromosome 17 open reading frame 101
2-oxoglutarate and iron-dependent oxygenase domain containing 3
Alias_symbol (synonym)FLJ22222
Other alias
HGNC (Hugo) OGFOD3
LocusID (NCBI) 79701
Atlas_Id 71104
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82389210 and ends at 82418637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OGFOD3 (17q25.3) / WDR45B (17q25.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OGFOD3   26174
Cards
Entrez_Gene (NCBI)OGFOD3  79701  2-oxoglutarate and iron dependent oxygenase domain containing 3
AliasesC17orf101
GeneCards (Weizmann)OGFOD3
Ensembl hg19 (Hinxton)ENSG00000181396 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181396 [Gene_View]  chr17:82389210-82418637 [Contig_View]  OGFOD3 [Vega]
ICGC DataPortalENSG00000181396
TCGA cBioPortalOGFOD3
AceView (NCBI)OGFOD3
Genatlas (Paris)OGFOD3
WikiGenes79701
SOURCE (Princeton)OGFOD3
Genetics Home Reference (NIH)OGFOD3
Genomic and cartography
GoldenPath hg38 (UCSC)OGFOD3  -     chr17:82389210-82418637 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGFOD3  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblOGFOD3 - 17q25.3 [CytoView hg19]  OGFOD3 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIOGFOD3 [Mapview hg19]  OGFOD3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025875 AK311057 BC008897 BC009297 BC023602
RefSeq transcript (Entrez)NM_024648 NM_175902
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGFOD3
Cluster EST : UnigeneHs.187505 [ NCBI ]
CGAP (NCI)Hs.187505
Alternative Splicing GalleryENSG00000181396
Gene ExpressionOGFOD3 [ NCBI-GEO ]   OGFOD3 [ EBI - ARRAY_EXPRESS ]   OGFOD3 [ SEEK ]   OGFOD3 [ MEM ]
Gene Expression Viewer (FireBrowse)OGFOD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79701
GTEX Portal (Tissue expression)OGFOD3
Human Protein AtlasENSG00000181396-OGFOD3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PK18   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PK18  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PK18
Splice isoforms : SwissVarQ6PK18
PhosPhoSitePlusQ6PK18
Domaine pattern : Prosite (Expaxy)FE2OG_OXY (PS51471)   
Domains : Interpro (EBI)Oxoglu/Fe-dep_dioxygenase    Pro_4_hyd_alph   
Domain families : Pfam (Sanger)2OG-FeII_Oxy_3 (PF13640)   
Domain families : Pfam (NCBI)pfam13640   
Domain families : Smart (EMBL)P4Hc (SM00702)  
Conserved Domain (NCBI)OGFOD3
DMDM Disease mutations79701
Blocks (Seattle)OGFOD3
SuperfamilyQ6PK18
Human Protein Atlas [tissue]ENSG00000181396-OGFOD3 [tissue]
Peptide AtlasQ6PK18
HPRD13386
IPIIPI00002884   IPI00217869   
Protein Interaction databases
DIP (DOE-UCLA)Q6PK18
IntAct (EBI)Q6PK18
FunCoupENSG00000181396
BioGRIDOGFOD3
STRING (EMBL)OGFOD3
ZODIACOGFOD3
Ontologies - Pathways
QuickGOQ6PK18
Ontology : AmiGOiron ion binding  membrane  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  L-ascorbic acid binding  dioxygenase activity  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIiron ion binding  membrane  integral component of membrane  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen  L-ascorbic acid binding  dioxygenase activity  oxidation-reduction process  extracellular exosome  
NDEx NetworkOGFOD3
Atlas of Cancer Signalling NetworkOGFOD3
Wikipedia pathwaysOGFOD3
Orthology - Evolution
OrthoDB79701
GeneTree (enSembl)ENSG00000181396
Phylogenetic Trees/Animal Genes : TreeFamOGFOD3
HOVERGENQ6PK18
HOGENOMQ6PK18
Homologs : HomoloGeneOGFOD3
Homology/Alignments : Family Browser (UCSC)OGFOD3
Gene fusions - Rearrangements
Tumor Fusion PortalOGFOD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGFOD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGFOD3
dbVarOGFOD3
ClinVarOGFOD3
1000_GenomesOGFOD3 
Exome Variant ServerOGFOD3
ExAC (Exome Aggregation Consortium)ENSG00000181396
GNOMAD BrowserENSG00000181396
Genetic variants : HAPMAP79701
Genomic Variants (DGV)OGFOD3 [DGVbeta]
DECIPHEROGFOD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGFOD3 
Mutations
ICGC Data PortalOGFOD3 
TCGA Data PortalOGFOD3 
Broad Tumor PortalOGFOD3
OASIS PortalOGFOD3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOGFOD3
BioMutasearch OGFOD3
DgiDB (Drug Gene Interaction Database)OGFOD3
DoCM (Curated mutations)OGFOD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGFOD3 (select a term)
intoGenOGFOD3
Cancer3DOGFOD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOGFOD3
MedgenOGFOD3
Genetic Testing Registry OGFOD3
NextProtQ6PK18 [Medical]
TSGene79701
GENETestsOGFOD3
Target ValidationOGFOD3
Huge Navigator OGFOD3 [HugePedia]
snp3D : Map Gene to Disease79701
BioCentury BCIQOGFOD3
ClinGenOGFOD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79701
Chemical/Pharm GKB GenePA164716907
Clinical trialOGFOD3
Miscellaneous
canSAR (ICR)OGFOD3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGFOD3
EVEXOGFOD3
GoPubMedOGFOD3
iHOPOGFOD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:36:27 CET 2017

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