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OGFR (opioid growth factor receptor)

Identity

Alias_symbol (synonym)7-60
Other alias-
HGNC (Hugo) OGFR
LocusID (NCBI) 11054
Atlas_Id 43878
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62804800 and ends at 62814000 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OGFR (20q13.33) / KLHL17 (1p36.33)OGFR (20q13.33) / OGFR (20q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OGFR   15768
Cards
Entrez_Gene (NCBI)OGFR  11054  opioid growth factor receptor
Aliases
GeneCards (Weizmann)OGFR
Ensembl hg19 (Hinxton)ENSG00000060491 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000060491 [Gene_View]  ENSG00000060491 [Sequence]  chr20:62804800-62814000 [Contig_View]  OGFR [Vega]
ICGC DataPortalENSG00000060491
TCGA cBioPortalOGFR
AceView (NCBI)OGFR
Genatlas (Paris)OGFR
WikiGenes11054
SOURCE (Princeton)OGFR
Genetics Home Reference (NIH)OGFR
Genomic and cartography
GoldenPath hg38 (UCSC)OGFR  -     chr20:62804800-62814000 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGFR  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblOGFR - 20q13.33 [CytoView hg19]  OGFR - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIOGFR [Mapview hg19]  OGFR [Mapview hg38]
OMIM606459   
Gene and transcription
Genbank (Entrez)AF109134 AF172449 AF172450 AF172451 AF172452
RefSeq transcript (Entrez)NM_007346
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGFR
Cluster EST : UnigeneHs.67896 [ NCBI ]
CGAP (NCI)Hs.67896
Alternative Splicing GalleryENSG00000060491
Gene ExpressionOGFR [ NCBI-GEO ]   OGFR [ EBI - ARRAY_EXPRESS ]   OGFR [ SEEK ]   OGFR [ MEM ]
Gene Expression Viewer (FireBrowse)OGFR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11054
GTEX Portal (Tissue expression)OGFR
Human Protein AtlasENSG00000060491-OGFR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZT2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZT2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZT2
Splice isoforms : SwissVarQ9NZT2
PhosPhoSitePlusQ9NZT2
Domains : Interpro (EBI)OGF_rcpt    OGF_rcpt_rpt   
Domain families : Pfam (Sanger)OGFr_III (PF04680)    OGFr_N (PF04664)   
Domain families : Pfam (NCBI)pfam04680    pfam04664   
Conserved Domain (NCBI)OGFR
DMDM Disease mutations11054
Blocks (Seattle)OGFR
SuperfamilyQ9NZT2
Human Protein Atlas [tissue]ENSG00000060491-OGFR [tissue]
Peptide AtlasQ9NZT2
HPRD08404
IPIIPI00021537   IPI00216130   IPI00449112   IPI00642693   IPI00937682   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZT2
IntAct (EBI)Q9NZT2
FunCoupENSG00000060491
BioGRIDOGFR
STRING (EMBL)OGFR
ZODIACOGFR
Ontologies - Pathways
QuickGOQ9NZT2
Ontology : AmiGOregulation of cell growth  opioid receptor activity  protein binding  cellular_component  nucleus  cytoplasm  membrane  opioid receptor signaling pathway  
Ontology : EGO-EBIregulation of cell growth  opioid receptor activity  protein binding  cellular_component  nucleus  cytoplasm  membrane  opioid receptor signaling pathway  
NDEx NetworkOGFR
Atlas of Cancer Signalling NetworkOGFR
Wikipedia pathwaysOGFR
Orthology - Evolution
OrthoDB11054
GeneTree (enSembl)ENSG00000060491
Phylogenetic Trees/Animal Genes : TreeFamOGFR
HOVERGENQ9NZT2
HOGENOMQ9NZT2
Homologs : HomoloGeneOGFR
Homology/Alignments : Family Browser (UCSC)OGFR
Gene fusions - Rearrangements
Fusion : QuiverOGFR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGFR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGFR
dbVarOGFR
ClinVarOGFR
1000_GenomesOGFR 
Exome Variant ServerOGFR
ExAC (Exome Aggregation Consortium)ENSG00000060491
GNOMAD BrowserENSG00000060491
Varsome BrowserOGFR
Genetic variants : HAPMAP11054
Genomic Variants (DGV)OGFR [DGVbeta]
DECIPHEROGFR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGFR 
Mutations
ICGC Data PortalOGFR 
TCGA Data PortalOGFR 
Broad Tumor PortalOGFR
OASIS PortalOGFR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOGFR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOGFR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OGFR
DgiDB (Drug Gene Interaction Database)OGFR
DoCM (Curated mutations)OGFR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGFR (select a term)
intoGenOGFR
Cancer3DOGFR(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606459   
Orphanet
DisGeNETOGFR
MedgenOGFR
Genetic Testing Registry OGFR
NextProtQ9NZT2 [Medical]
TSGene11054
GENETestsOGFR
Target ValidationOGFR
Huge Navigator OGFR [HugePedia]
snp3D : Map Gene to Disease11054
BioCentury BCIQOGFR
ClinGenOGFR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11054
Chemical/Pharm GKB GenePA31911
Clinical trialOGFR
Miscellaneous
canSAR (ICR)OGFR (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGFR
EVEXOGFR
GoPubMedOGFR
iHOPOGFR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:27:35 CET 2018

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