Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OGFRL1 (opioid growth factor receptor like 1)

Identity

Alias_symbol (synonym)dJ331H24.1
Other alias
HGNC (Hugo) OGFRL1
LocusID (NCBI) 79627
Atlas_Id 71106
Location 6q13  [Link to chromosome band 6q13]
Location_base_pair Starts at 71288442 and ends at 71309059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OGFRL1   21378
Cards
Entrez_Gene (NCBI)OGFRL1  79627  opioid growth factor receptor like 1
AliasesdJ331H24.1
GeneCards (Weizmann)OGFRL1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:71288442-71309059 [Contig_View]  OGFRL1 [Vega]
TCGA cBioPortalOGFRL1
AceView (NCBI)OGFRL1
Genatlas (Paris)OGFRL1
WikiGenes79627
SOURCE (Princeton)OGFRL1
Genetics Home Reference (NIH)OGFRL1
Genomic and cartography
GoldenPath hg38 (UCSC)OGFRL1  -     chr6:71288442-71309059 +  6q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGFRL1  -     6q13   [Description]    (hg19-Feb_2009)
EnsemblOGFRL1 - 6q13 [CytoView hg19]  OGFRL1 - 6q13 [CytoView hg38]
Mapping of homologs : NCBIOGFRL1 [Mapview hg19]  OGFRL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI800853 AK024732 AK124833 AK308623 AL137346
RefSeq transcript (Entrez)NM_001324266 NM_024576
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGFRL1
Cluster EST : UnigeneHs.734751 [ NCBI ]
CGAP (NCI)Hs.734751
Gene ExpressionOGFRL1 [ NCBI-GEO ]   OGFRL1 [ EBI - ARRAY_EXPRESS ]   OGFRL1 [ SEEK ]   OGFRL1 [ MEM ]
Gene Expression Viewer (FireBrowse)OGFRL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79627
GTEX Portal (Tissue expression)OGFRL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TC84   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TC84  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TC84
Splice isoforms : SwissVarQ5TC84
PhosPhoSitePlusQ5TC84
Domains : Interpro (EBI)OGF_rcpt   
Domain families : Pfam (Sanger)OGFr_N (PF04664)   
Domain families : Pfam (NCBI)pfam04664   
Conserved Domain (NCBI)OGFRL1
DMDM Disease mutations79627
Blocks (Seattle)OGFRL1
SuperfamilyQ5TC84
Peptide AtlasQ5TC84
HPRD14875
IPIIPI00385437   
Protein Interaction databases
DIP (DOE-UCLA)Q5TC84
IntAct (EBI)Q5TC84
BioGRIDOGFRL1
STRING (EMBL)OGFRL1
ZODIACOGFRL1
Ontologies - Pathways
QuickGOQ5TC84
Ontology : AmiGOreceptor activity  membrane  
Ontology : EGO-EBIreceptor activity  membrane  
NDEx NetworkOGFRL1
Atlas of Cancer Signalling NetworkOGFRL1
Wikipedia pathwaysOGFRL1
Orthology - Evolution
OrthoDB79627
Phylogenetic Trees/Animal Genes : TreeFamOGFRL1
HOVERGENQ5TC84
HOGENOMQ5TC84
Homologs : HomoloGeneOGFRL1
Homology/Alignments : Family Browser (UCSC)OGFRL1
Gene fusions - Rearrangements
Fusion : QuiverOGFRL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGFRL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGFRL1
dbVarOGFRL1
ClinVarOGFRL1
1000_GenomesOGFRL1 
Exome Variant ServerOGFRL1
Genetic variants : HAPMAP79627
Genomic Variants (DGV)OGFRL1 [DGVbeta]
DECIPHEROGFRL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGFRL1 
Mutations
ICGC Data PortalOGFRL1 
TCGA Data PortalOGFRL1 
Broad Tumor PortalOGFRL1
OASIS PortalOGFRL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOGFRL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOGFRL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OGFRL1
DgiDB (Drug Gene Interaction Database)OGFRL1
DoCM (Curated mutations)OGFRL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGFRL1 (select a term)
intoGenOGFRL1
Cancer3DOGFRL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOGFRL1
MedgenOGFRL1
Genetic Testing Registry OGFRL1
NextProtQ5TC84 [Medical]
TSGene79627
GENETestsOGFRL1
Target ValidationOGFRL1
Huge Navigator OGFRL1 [HugePedia]
snp3D : Map Gene to Disease79627
BioCentury BCIQOGFRL1
ClinGenOGFRL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79627
Chemical/Pharm GKB GenePA128394713
Clinical trialOGFRL1
Miscellaneous
canSAR (ICR)OGFRL1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGFRL1
EVEXOGFRL1
GoPubMedOGFRL1
iHOPOGFRL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Feb 23 18:45:16 CET 2018

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