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OGN (osteoglycin)

Identity

Alias_namesosteoglycin (osteoinductive factor)
Alias_symbol (synonym)mimecan
OIF
SLRR3A
Other aliasOG
HGNC (Hugo) OGN
LocusID (NCBI) 4969
Atlas_Id 41607
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 92383271 and ends at 92404699 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OGN   8126
Cards
Entrez_Gene (NCBI)OGN  4969  osteoglycin
AliasesOG; OIF; SLRR3A
GeneCards (Weizmann)OGN
Ensembl hg19 (Hinxton)ENSG00000106809 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106809 [Gene_View]  ENSG00000106809 [Sequence]  chr9:92383271-92404699 [Contig_View]  OGN [Vega]
ICGC DataPortalENSG00000106809
TCGA cBioPortalOGN
AceView (NCBI)OGN
Genatlas (Paris)OGN
WikiGenes4969
SOURCE (Princeton)OGN
Genetics Home Reference (NIH)OGN
Genomic and cartography
GoldenPath hg38 (UCSC)OGN  -     chr9:92383271-92404699 -  9q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OGN  -     9q22.31   [Description]    (hg19-Feb_2009)
EnsemblOGN - 9q22.31 [CytoView hg19]  OGN - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIOGN [Mapview hg19]  OGN [Mapview hg38]
OMIM602383   
Gene and transcription
Genbank (Entrez)AF086912 AF088023 AF100758 AF173383 AF202167
RefSeq transcript (Entrez)NM_014057 NM_024416 NM_033014
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OGN
Cluster EST : UnigeneHs.617761 [ NCBI ]
CGAP (NCI)Hs.617761
Alternative Splicing GalleryENSG00000106809
Gene ExpressionOGN [ NCBI-GEO ]   OGN [ EBI - ARRAY_EXPRESS ]   OGN [ SEEK ]   OGN [ MEM ]
Gene Expression Viewer (FireBrowse)OGN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4969
GTEX Portal (Tissue expression)OGN
Human Protein AtlasENSG00000106809-OGN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP20774   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP20774  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP20774
Splice isoforms : SwissVarP20774
PhosPhoSitePlusP20774
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    Mimecan   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  
Conserved Domain (NCBI)OGN
DMDM Disease mutations4969
Blocks (Seattle)OGN
SuperfamilyP20774
Human Protein Atlas [tissue]ENSG00000106809-OGN [tissue]
Peptide AtlasP20774
HPRD03856
IPIIPI00025465   IPI00385093   IPI00515092   
Protein Interaction databases
DIP (DOE-UCLA)P20774
IntAct (EBI)P20774
FunCoupENSG00000106809
BioGRIDOGN
STRING (EMBL)OGN
ZODIACOGN
Ontologies - Pathways
QuickGOP20774
Ontology : AmiGOprotein binding  extracellular region  extracellular region  proteinaceous extracellular matrix  extracellular space  Golgi lumen  axonogenesis  growth factor activity  regulation of receptor activity  keratan sulfate biosynthetic process  extracellular matrix  extracellular matrix  keratan sulfate catabolic process  lysosomal lumen  negative regulation of smooth muscle cell proliferation  extracellular exosome  extracellular vesicle  
Ontology : EGO-EBIprotein binding  extracellular region  extracellular region  proteinaceous extracellular matrix  extracellular space  Golgi lumen  axonogenesis  growth factor activity  regulation of receptor activity  keratan sulfate biosynthetic process  extracellular matrix  extracellular matrix  keratan sulfate catabolic process  lysosomal lumen  negative regulation of smooth muscle cell proliferation  extracellular exosome  extracellular vesicle  
NDEx NetworkOGN
Atlas of Cancer Signalling NetworkOGN
Wikipedia pathwaysOGN
Orthology - Evolution
OrthoDB4969
GeneTree (enSembl)ENSG00000106809
Phylogenetic Trees/Animal Genes : TreeFamOGN
HOVERGENP20774
HOGENOMP20774
Homologs : HomoloGeneOGN
Homology/Alignments : Family Browser (UCSC)OGN
Gene fusions - Rearrangements
Fusion : QuiverOGN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOGN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OGN
dbVarOGN
ClinVarOGN
1000_GenomesOGN 
Exome Variant ServerOGN
ExAC (Exome Aggregation Consortium)ENSG00000106809
GNOMAD BrowserENSG00000106809
Genetic variants : HAPMAP4969
Genomic Variants (DGV)OGN [DGVbeta]
DECIPHEROGN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOGN 
Mutations
ICGC Data PortalOGN 
TCGA Data PortalOGN 
Broad Tumor PortalOGN
OASIS PortalOGN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOGN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOGN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OGN
DgiDB (Drug Gene Interaction Database)OGN
DoCM (Curated mutations)OGN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OGN (select a term)
intoGenOGN
Cancer3DOGN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602383   
Orphanet
DisGeNETOGN
MedgenOGN
Genetic Testing Registry OGN
NextProtP20774 [Medical]
TSGene4969
GENETestsOGN
Target ValidationOGN
Huge Navigator OGN [HugePedia]
snp3D : Map Gene to Disease4969
BioCentury BCIQOGN
ClinGenOGN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4969
Chemical/Pharm GKB GenePA31913
Clinical trialOGN
Miscellaneous
canSAR (ICR)OGN (select the gene name)
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOGN
EVEXOGN
GoPubMedOGN
iHOPOGN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jun 22 16:41:14 CEST 2018

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