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OIP5 (Opa interacting protein 5)

Identity

Alias (NCBI)5730547N13Rik
CT86
LINT-25
MIS18B
MIS18beta
hMIS18beta
HGNC (Hugo) OIP5
HGNC Alias symbMIS18B
hMIS18beta
CT86
HGNC Alias nameMIS18 kinetochore protein homolog B (S. pombe)
 cancer/testis antigen 86
LocusID (NCBI) 11339
Atlas_Id 51671
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 41309273 and ends at 41332591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MYO5A (15q21.2) / OIP5 (15q15.1)OIP5 (15q15.1) / NUSAP1 (15q15.1)PCNP (3q12.3) / OIP5 (15q15.1)
MYO5A 15q21.2 / OIP5 15q15.1OIP5 15q15.1 / NUSAP1 15q15.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OIP5   20300
Cards
Entrez_Gene (NCBI)OIP5    Opa interacting protein 5
Aliases5730547N13Rik; CT86; LINT-25; MIS18B; 
MIS18beta; hMIS18beta
GeneCards (Weizmann)OIP5
Ensembl hg19 (Hinxton)ENSG00000104147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104147 [Gene_View]  ENSG00000104147 [Sequence]  chr15:41309273-41332591 [Contig_View]  OIP5 [Vega]
ICGC DataPortalENSG00000104147
TCGA cBioPortalOIP5
AceView (NCBI)OIP5
Genatlas (Paris)OIP5
SOURCE (Princeton)OIP5
Genetics Home Reference (NIH)OIP5
Genomic and cartography
GoldenPath hg38 (UCSC)OIP5  -     chr15:41309273-41332591 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OIP5  -     15q15.1   [Description]    (hg19-Feb_2009)
GoldenPathOIP5 - 15q15.1 [CytoView hg19]  OIP5 - 15q15.1 [CytoView hg38]
ImmunoBaseENSG00000104147
Genome Data Viewer NCBIOIP5 [Mapview hg19]  
OMIM606020   
Gene and transcription
Genbank (Entrez)AF025441 AW406383 BC015050
RefSeq transcript (Entrez)NM_001317860 NM_007280
Consensus coding sequences : CCDS (NCBI)OIP5
Gene ExpressionOIP5 [ NCBI-GEO ]   OIP5 [ EBI - ARRAY_EXPRESS ]   OIP5 [ SEEK ]   OIP5 [ MEM ]
Gene Expression Viewer (FireBrowse)OIP5 [ Firebrowse - Broad ]
GenevisibleExpression of OIP5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11339
GTEX Portal (Tissue expression)OIP5
Human Protein AtlasENSG00000104147-OIP5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43482   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43482  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43482
PhosPhoSitePlusO43482
Domaine pattern : Prosite (Expaxy)MIS18 (PS51793)   
Domains : Interpro (EBI)Mis18    Yippee/Mis18/Cereblon   
Domain families : Pfam (Sanger)Yippee-Mis18 (PF03226)   
Domain families : Pfam (NCBI)pfam03226   
Conserved Domain (NCBI)OIP5
SuperfamilyO43482
AlphaFold pdb e-kbO43482   
Human Protein Atlas [tissue]ENSG00000104147-OIP5 [tissue]
HPRD09352
Protein Interaction databases
DIP (DOE-UCLA)O43482
IntAct (EBI)O43482
BioGRIDOIP5
STRING (EMBL)OIP5
ZODIACOIP5
Ontologies - Pathways
QuickGOO43482
Ontology : AmiGOchromosome, centromeric region  chromatin  chromatin  protein binding  nucleus  nucleus  nucleoplasm  cell cycle  chromosome segregation  cell communication  chromocenter  Cajal body  nuclear speck  CENP-A containing nucleosome assembly  CENP-A containing nucleosome assembly  identical protein binding  intracellular membrane-bounded organelle  metal ion binding  cell division  
Ontology : EGO-EBIchromosome, centromeric region  chromatin  chromatin  protein binding  nucleus  nucleus  nucleoplasm  cell cycle  chromosome segregation  cell communication  chromocenter  Cajal body  nuclear speck  CENP-A containing nucleosome assembly  CENP-A containing nucleosome assembly  identical protein binding  intracellular membrane-bounded organelle  metal ion binding  cell division  
NDEx NetworkOIP5
Atlas of Cancer Signalling NetworkOIP5
Wikipedia pathwaysOIP5
Orthology - Evolution
OrthoDB11339
GeneTree (enSembl)ENSG00000104147
Phylogenetic Trees/Animal Genes : TreeFamOIP5
Homologs : HomoloGeneOIP5
Homology/Alignments : Family Browser (UCSC)OIP5
Gene fusions - Rearrangements
Fusion : MitelmanMYO5A/OIP5 [15q21.2/15q15.1]  
Fusion : MitelmanOIP5/NUSAP1 [15q15.1/15q15.1]  
Fusion : QuiverOIP5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOIP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OIP5
dbVarOIP5
ClinVarOIP5
MonarchOIP5
1000_GenomesOIP5 
Exome Variant ServerOIP5
GNOMAD BrowserENSG00000104147
Varsome BrowserOIP5
ACMGOIP5 variants
VarityO43482
Genomic Variants (DGV)OIP5 [DGVbeta]
DECIPHEROIP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOIP5 
Mutations
ICGC Data PortalOIP5 
TCGA Data PortalOIP5 
Broad Tumor PortalOIP5
OASIS PortalOIP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOIP5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOIP5
Mutations and Diseases : HGMDOIP5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOIP5
DgiDB (Drug Gene Interaction Database)OIP5
DoCM (Curated mutations)OIP5
CIViC (Clinical Interpretations of Variants in Cancer)OIP5
Cancer3DOIP5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606020   
Orphanet
DisGeNETOIP5
MedgenOIP5
Genetic Testing Registry OIP5
NextProtO43482 [Medical]
GENETestsOIP5
Target ValidationOIP5
Huge Navigator OIP5 [HugePedia]
ClinGenOIP5
Clinical trials, drugs, therapy
MyCancerGenomeOIP5
Protein Interactions : CTDOIP5
Pharm GKB GenePA134887641
PharosO43482
Clinical trialOIP5
Miscellaneous
canSAR (ICR)OIP5
HarmonizomeOIP5
DataMed IndexOIP5
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOIP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:23:42 CEST 2021

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