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OIP5 (Opa interacting protein 5)

Identity

Alias_symbol (synonym)MIS18B
hMIS18beta
CT86
Other alias5730547N13Rik
LINT-25
MIS18beta
HGNC (Hugo) OIP5
LocusID (NCBI) 11339
Atlas_Id 51671
Location 15q15.1  [Link to chromosome band 15q15]
Location_base_pair Starts at 41309268 and ends at 41332621 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MYO5A (15q21.2) / OIP5 (15q15.1)OIP5 (15q15.1) / NUSAP1 (15q15.1)PCNP (3q12.3) / OIP5 (15q15.1)
MYO5A 15q21.2 / OIP5 15q15.1OIP5 15q15.1 / NUSAP1 15q15.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OIP5   20300
Cards
Entrez_Gene (NCBI)OIP5  11339  Opa interacting protein 5
Aliases5730547N13Rik; CT86; LINT-25; MIS18B; 
MIS18beta; hMIS18beta
GeneCards (Weizmann)OIP5
Ensembl hg19 (Hinxton)ENSG00000104147 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104147 [Gene_View]  chr15:41309268-41332621 [Contig_View]  OIP5 [Vega]
ICGC DataPortalENSG00000104147
TCGA cBioPortalOIP5
AceView (NCBI)OIP5
Genatlas (Paris)OIP5
WikiGenes11339
SOURCE (Princeton)OIP5
Genetics Home Reference (NIH)OIP5
Genomic and cartography
GoldenPath hg38 (UCSC)OIP5  -     chr15:41309268-41332621 -  15q15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OIP5  -     15q15.1   [Description]    (hg19-Feb_2009)
EnsemblOIP5 - 15q15.1 [CytoView hg19]  OIP5 - 15q15.1 [CytoView hg38]
Mapping of homologs : NCBIOIP5 [Mapview hg19]  OIP5 [Mapview hg38]
OMIM606020   
Gene and transcription
Genbank (Entrez)AF025441 AW406383 BC015050
RefSeq transcript (Entrez)NM_001317860 NM_007280
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OIP5
Cluster EST : UnigeneHs.661645 [ NCBI ]
CGAP (NCI)Hs.661645
Alternative Splicing GalleryENSG00000104147
Gene ExpressionOIP5 [ NCBI-GEO ]   OIP5 [ EBI - ARRAY_EXPRESS ]   OIP5 [ SEEK ]   OIP5 [ MEM ]
Gene Expression Viewer (FireBrowse)OIP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11339
GTEX Portal (Tissue expression)OIP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43482   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43482  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43482
Splice isoforms : SwissVarO43482
PhosPhoSitePlusO43482
Domaine pattern : Prosite (Expaxy)MIS18 (PS51793)   
Domains : Interpro (EBI)Yippee/Mis18/Cereblon   
Domain families : Pfam (Sanger)Yippee-Mis18 (PF03226)   
Domain families : Pfam (NCBI)pfam03226   
Conserved Domain (NCBI)OIP5
DMDM Disease mutations11339
Blocks (Seattle)OIP5
SuperfamilyO43482
Human Protein AtlasENSG00000104147
Peptide AtlasO43482
HPRD09352
IPIIPI00001999   
Protein Interaction databases
DIP (DOE-UCLA)O43482
IntAct (EBI)O43482
FunCoupENSG00000104147
BioGRIDOIP5
STRING (EMBL)OIP5
ZODIACOIP5
Ontologies - Pathways
QuickGOO43482
Ontology : AmiGOchromosome, centromeric region  chromatin  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  cell cycle  chromosome segregation  cell communication  chromocenter  Cajal body  nuclear speck  CENP-A containing nucleosome assembly  CENP-A containing nucleosome assembly  identical protein binding  metal ion binding  cell division  
Ontology : EGO-EBIchromosome, centromeric region  chromatin  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  cell cycle  chromosome segregation  cell communication  chromocenter  Cajal body  nuclear speck  CENP-A containing nucleosome assembly  CENP-A containing nucleosome assembly  identical protein binding  metal ion binding  cell division  
NDEx NetworkOIP5
Atlas of Cancer Signalling NetworkOIP5
Wikipedia pathwaysOIP5
Orthology - Evolution
OrthoDB11339
GeneTree (enSembl)ENSG00000104147
Phylogenetic Trees/Animal Genes : TreeFamOIP5
HOVERGENO43482
HOGENOMO43482
Homologs : HomoloGeneOIP5
Homology/Alignments : Family Browser (UCSC)OIP5
Gene fusions - Rearrangements
Fusion : MitelmanMYO5A/OIP5 [15q21.2/15q15.1]  [t(15;15)(q15;q21)]  
Fusion : MitelmanOIP5/NUSAP1 [15q15.1/15q15.1]  [t(15;15)(q15;q15)]  
Fusion: TCGAMYO5A 15q21.2 OIP5 15q15.1 BRCA
Fusion: TCGAOIP5 15q15.1 NUSAP1 15q15.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOIP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OIP5
dbVarOIP5
ClinVarOIP5
1000_GenomesOIP5 
Exome Variant ServerOIP5
ExAC (Exome Aggregation Consortium)OIP5 (select the gene name)
Genetic variants : HAPMAP11339
Genomic Variants (DGV)OIP5 [DGVbeta]
DECIPHEROIP5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOIP5 
Mutations
ICGC Data PortalOIP5 
TCGA Data PortalOIP5 
Broad Tumor PortalOIP5
OASIS PortalOIP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOIP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOIP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OIP5
DgiDB (Drug Gene Interaction Database)OIP5
DoCM (Curated mutations)OIP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OIP5 (select a term)
intoGenOIP5
Cancer3DOIP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606020   
Orphanet
MedgenOIP5
Genetic Testing Registry OIP5
NextProtO43482 [Medical]
TSGene11339
GENETestsOIP5
Target ValidationOIP5
Huge Navigator OIP5 [HugePedia]
snp3D : Map Gene to Disease11339
BioCentury BCIQOIP5
ClinGenOIP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11339
Chemical/Pharm GKB GenePA134887641
Clinical trialOIP5
Miscellaneous
canSAR (ICR)OIP5 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOIP5
EVEXOIP5
GoPubMedOIP5
iHOPOIP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:09:41 CEST 2017

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