Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OIT3 (oncoprotein induced transcript 3)

Identity

Alias_symbol (synonym)LZP
FLJ39116
Other alias
HGNC (Hugo) OIT3
LocusID (NCBI) 170392
Atlas_Id 55650
Location 10q22.1  [Link to chromosome band 10q22]
Location_base_pair Starts at 74653314 and ends at 74692794 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OIT3   29953
Cards
Entrez_Gene (NCBI)OIT3  170392  oncoprotein induced transcript 3
AliasesLZP
GeneCards (Weizmann)OIT3
Ensembl hg19 (Hinxton)ENSG00000138315 [Gene_View]  chr10:74653314-74692794 [Contig_View]  OIT3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138315 [Gene_View]  chr10:74653314-74692794 [Contig_View]  OIT3 [Vega]
ICGC DataPortalENSG00000138315
TCGA cBioPortalOIT3
AceView (NCBI)OIT3
Genatlas (Paris)OIT3
WikiGenes170392
SOURCE (Princeton)OIT3
Genetics Home Reference (NIH)OIT3
Genomic and cartography
GoldenPath hg19 (UCSC)OIT3  -     chr10:74653314-74692794 +  10q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OIT3  -     10q22.1   [Description]    (hg38-Dec_2013)
EnsemblOIT3 - 10q22.1 [CytoView hg19]  OIT3 - 10q22.1 [CytoView hg38]
Mapping of homologs : NCBIOIT3 [Mapview hg19]  OIT3 [Mapview hg38]
OMIM609330   
Gene and transcription
Genbank (Entrez)AF075085 AK096435 AY013707 AY358339 BC126440
RefSeq transcript (Entrez)NM_152635
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)OIT3
Cluster EST : UnigeneHs.8366 [ NCBI ]
CGAP (NCI)Hs.8366
Alternative Splicing GalleryENSG00000138315
Gene ExpressionOIT3 [ NCBI-GEO ]   OIT3 [ EBI - ARRAY_EXPRESS ]   OIT3 [ SEEK ]   OIT3 [ MEM ]
Gene Expression Viewer (FireBrowse)OIT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170392
GTEX Portal (Tissue expression)OIT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWZ8
Splice isoforms : SwissVarQ8WWZ8
PhosPhoSitePlusQ8WWZ8
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_CA (PS01187)    ZP_2 (PS51034)   
Domains : Interpro (EBI)EGF-like_Ca-bd_dom    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    ZP_dom   
Domain families : Pfam (Sanger)Zona_pellucida (PF00100)   
Domain families : Pfam (NCBI)pfam00100   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  ZP (SM00241)  
Conserved Domain (NCBI)OIT3
DMDM Disease mutations170392
Blocks (Seattle)OIT3
SuperfamilyQ8WWZ8
Human Protein AtlasENSG00000138315
Peptide AtlasQ8WWZ8
HPRD17660
IPIIPI00328215   IPI00855752   IPI00953104   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWZ8
IntAct (EBI)Q8WWZ8
FunCoupENSG00000138315
BioGRIDOIT3
STRING (EMBL)OIT3
ZODIACOIT3
Ontologies - Pathways
QuickGOQ8WWZ8
Ontology : AmiGOcalcium ion binding  protein binding  nuclear envelope  urate homeostasis  
Ontology : EGO-EBIcalcium ion binding  protein binding  nuclear envelope  urate homeostasis  
NDEx NetworkOIT3
Atlas of Cancer Signalling NetworkOIT3
Wikipedia pathwaysOIT3
Orthology - Evolution
OrthoDB170392
GeneTree (enSembl)ENSG00000138315
Phylogenetic Trees/Animal Genes : TreeFamOIT3
HOVERGENQ8WWZ8
HOGENOMQ8WWZ8
Homologs : HomoloGeneOIT3
Homology/Alignments : Family Browser (UCSC)OIT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOIT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OIT3
dbVarOIT3
ClinVarOIT3
1000_GenomesOIT3 
Exome Variant ServerOIT3
ExAC (Exome Aggregation Consortium)OIT3 (select the gene name)
Genetic variants : HAPMAP170392
Genomic Variants (DGV)OIT3 [DGVbeta]
DECIPHER (Syndromes)10:74653314-74692794  ENSG00000138315
CONAN: Copy Number AnalysisOIT3 
Mutations
ICGC Data PortalOIT3 
TCGA Data PortalOIT3 
Broad Tumor PortalOIT3
OASIS PortalOIT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOIT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOIT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OIT3
DgiDB (Drug Gene Interaction Database)OIT3
DoCM (Curated mutations)OIT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OIT3 (select a term)
intoGenOIT3
Cancer3DOIT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609330   
Orphanet
MedgenOIT3
Genetic Testing Registry OIT3
NextProtQ8WWZ8 [Medical]
TSGene170392
GENETestsOIT3
Huge Navigator OIT3 [HugePedia]
snp3D : Map Gene to Disease170392
BioCentury BCIQOIT3
ClinGenOIT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170392
Chemical/Pharm GKB GenePA142671231
Clinical trialOIT3
Miscellaneous
canSAR (ICR)OIT3 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOIT3
EVEXOIT3
GoPubMedOIT3
iHOPOIT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:13:02 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.