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OLFM2 (olfactomedin 2)

Identity

Alias (NCBI)NOE2
NOELIN2
NOELIN2_V1
OlfC
HGNC (Hugo) OLFM2
HGNC Alias symbOlfC
NOE2
HGNC Alias namenoelin 2
LocusID (NCBI) 93145
Atlas_Id 71113
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9853718 and ends at 9936515 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CARM1 (19p13.2) / OLFM2 (19p13.2)CEP170B (14q32.33) / OLFM2 (19p13.2)KREMEN1 (22q12.1) / OLFM2 (19p13.2)
OLFM2 (19p13.2) / CEP112 (17q24.1)OLFM2 (19p13.2) / COL5A3 (19p13.2)OLFM2 (19p13.2) / TBC1D21 (15q24.1)
OLFM2 (19p13.2) / TMEM205 (19p13.2)ZNF121 (19p13.2) / OLFM2 (19p13.2)OLFM2 TBC1D21
OLFM2 CEP112OLFM2 COL5A3OLFM2 TMEM205
ZNF121 OLFM2CARM1 OLFM2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OLFM2   17189
Cards
Entrez_Gene (NCBI)OLFM2    olfactomedin 2
AliasesNOE2; NOELIN2; NOELIN2_V1; OlfC
GeneCards (Weizmann)OLFM2
Ensembl hg19 (Hinxton)ENSG00000105088 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105088 [Gene_View]  ENSG00000105088 [Sequence]  chr19:9853718-9936515 [Contig_View]  OLFM2 [Vega]
ICGC DataPortalENSG00000105088
TCGA cBioPortalOLFM2
AceView (NCBI)OLFM2
Genatlas (Paris)OLFM2
SOURCE (Princeton)OLFM2
Genetics Home Reference (NIH)OLFM2
Genomic and cartography
GoldenPath hg38 (UCSC)OLFM2  -     chr19:9853718-9936515 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OLFM2  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathOLFM2 - 19p13.2 [CytoView hg19]  OLFM2 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000105088
Genome Data Viewer NCBIOLFM2 [Mapview hg19]  
OMIM617492   
Gene and transcription
Genbank (Entrez)AF131839 AL535795 AL538120 BC011361 BE252295
RefSeq transcript (Entrez)NM_001304347 NM_001304348 NM_058164
Consensus coding sequences : CCDS (NCBI)OLFM2
Gene ExpressionOLFM2 [ NCBI-GEO ]   OLFM2 [ EBI - ARRAY_EXPRESS ]   OLFM2 [ SEEK ]   OLFM2 [ MEM ]
Gene Expression Viewer (FireBrowse)OLFM2 [ Firebrowse - Broad ]
GenevisibleExpression of OLFM2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93145
GTEX Portal (Tissue expression)OLFM2
Human Protein AtlasENSG00000105088-OLFM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95897   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95897  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95897
PhosPhoSitePlusO95897
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Noelin-2    Noelin_dom    Olfac-like_dom   
Domain families : Pfam (Sanger)Noelin-1 (PF12308)    OLF (PF02191)   
Domain families : Pfam (NCBI)pfam12308    pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
Conserved Domain (NCBI)OLFM2
SuperfamilyO95897
AlphaFold pdb e-kbO95897   
Human Protein Atlas [tissue]ENSG00000105088-OLFM2 [tissue]
HPRD10127
Protein Interaction databases
DIP (DOE-UCLA)O95897
IntAct (EBI)O95897
BioGRIDOLFM2
STRING (EMBL)OLFM2
ZODIACOLFM2
Ontologies - Pathways
QuickGOO95897
Ontology : AmiGOprotein binding  extracellular region  nucleus  nucleoplasm  cytoplasm  protein secretion  AMPA glutamate receptor complex  synapse  positive regulation of smooth muscle cell differentiation  regulation of vascular associated smooth muscle cell dedifferentiation  
Ontology : EGO-EBIprotein binding  extracellular region  nucleus  nucleoplasm  cytoplasm  protein secretion  AMPA glutamate receptor complex  synapse  positive regulation of smooth muscle cell differentiation  regulation of vascular associated smooth muscle cell dedifferentiation  
NDEx NetworkOLFM2
Atlas of Cancer Signalling NetworkOLFM2
Wikipedia pathwaysOLFM2
Orthology - Evolution
OrthoDB93145
GeneTree (enSembl)ENSG00000105088
Phylogenetic Trees/Animal Genes : TreeFamOLFM2
Homologs : HomoloGeneOLFM2
Homology/Alignments : Family Browser (UCSC)OLFM2
Gene fusions - Rearrangements
Fusion : QuiverOLFM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOLFM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OLFM2
dbVarOLFM2
ClinVarOLFM2
MonarchOLFM2
1000_GenomesOLFM2 
Exome Variant ServerOLFM2
GNOMAD BrowserENSG00000105088
Varsome BrowserOLFM2
ACMGOLFM2 variants
VarityO95897
Genomic Variants (DGV)OLFM2 [DGVbeta]
DECIPHEROLFM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOLFM2 
Mutations
ICGC Data PortalOLFM2 
TCGA Data PortalOLFM2 
Broad Tumor PortalOLFM2
OASIS PortalOLFM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOLFM2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOLFM2
Mutations and Diseases : HGMDOLFM2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOLFM2
DgiDB (Drug Gene Interaction Database)OLFM2
DoCM (Curated mutations)OLFM2
CIViC (Clinical Interpretations of Variants in Cancer)OLFM2
Cancer3DOLFM2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617492   
Orphanet
DisGeNETOLFM2
MedgenOLFM2
Genetic Testing Registry OLFM2
NextProtO95897 [Medical]
GENETestsOLFM2
Target ValidationOLFM2
Huge Navigator OLFM2 [HugePedia]
ClinGenOLFM2
Clinical trials, drugs, therapy
MyCancerGenomeOLFM2
Protein Interactions : CTDOLFM2
Pharm GKB GenePA31916
PharosO95897
Clinical trialOLFM2
Miscellaneous
canSAR (ICR)OLFM2
HarmonizomeOLFM2
DataMed IndexOLFM2
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOLFM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:13:34 CEST 2021

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