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OLFM2 (olfactomedin 2)

Identity

Alias_symbol (synonym)OlfC
NOE2
Other aliasNOELIN2
NOELIN2_V1
HGNC (Hugo) OLFM2
LocusID (NCBI) 93145
Atlas_Id 71113
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 9853718 and ends at 9913705 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CARM1 (19p13.2) / OLFM2 (19p13.2)CEP170B (14q32.33) / OLFM2 (19p13.2)KREMEN1 (22q12.1) / OLFM2 (19p13.2)
OLFM2 (19p13.2) / CEP112 (17q24.1)OLFM2 (19p13.2) / COL5A3 (19p13.2)OLFM2 (19p13.2) / TBC1D21 (15q24.1)
OLFM2 (19p13.2) / TMEM205 (19p13.2)ZNF121 (19p13.2) / OLFM2 (19p13.2)OLFM2 TBC1D21
OLFM2 CEP112OLFM2 COL5A3OLFM2 TMEM205
ZNF121 OLFM2CARM1 OLFM2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OLFM2   17189
Cards
Entrez_Gene (NCBI)OLFM2  93145  olfactomedin 2
AliasesNOE2; NOELIN2; NOELIN2_V1; OlfC
GeneCards (Weizmann)OLFM2
Ensembl hg19 (Hinxton)ENSG00000105088 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105088 [Gene_View]  chr19:9853718-9913705 [Contig_View]  OLFM2 [Vega]
ICGC DataPortalENSG00000105088
TCGA cBioPortalOLFM2
AceView (NCBI)OLFM2
Genatlas (Paris)OLFM2
WikiGenes93145
SOURCE (Princeton)OLFM2
Genetics Home Reference (NIH)OLFM2
Genomic and cartography
GoldenPath hg38 (UCSC)OLFM2  -     chr19:9853718-9913705 -  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OLFM2  -     19p13.2   [Description]    (hg19-Feb_2009)
EnsemblOLFM2 - 19p13.2 [CytoView hg19]  OLFM2 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIOLFM2 [Mapview hg19]  OLFM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131839 AL535795 AL538120 BC011361 BE252295
RefSeq transcript (Entrez)NM_001304347 NM_001304348 NM_058164
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OLFM2
Cluster EST : UnigeneHs.169743 [ NCBI ]
CGAP (NCI)Hs.169743
Alternative Splicing GalleryENSG00000105088
Gene ExpressionOLFM2 [ NCBI-GEO ]   OLFM2 [ EBI - ARRAY_EXPRESS ]   OLFM2 [ SEEK ]   OLFM2 [ MEM ]
Gene Expression Viewer (FireBrowse)OLFM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93145
GTEX Portal (Tissue expression)OLFM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95897   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95897  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95897
Splice isoforms : SwissVarO95897
PhosPhoSitePlusO95897
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Noelin-2    Noelin_dom    Olfac-like_dom   
Domain families : Pfam (Sanger)Noelin-1 (PF12308)    OLF (PF02191)   
Domain families : Pfam (NCBI)pfam12308    pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
Conserved Domain (NCBI)OLFM2
DMDM Disease mutations93145
Blocks (Seattle)OLFM2
SuperfamilyO95897
Human Protein AtlasENSG00000105088
Peptide AtlasO95897
HPRD10127
IPIIPI00295767   
Protein Interaction databases
DIP (DOE-UCLA)O95897
IntAct (EBI)O95897
FunCoupENSG00000105088
BioGRIDOLFM2
STRING (EMBL)OLFM2
ZODIACOLFM2
Ontologies - Pathways
QuickGOO95897
Ontology : AmiGOprotein binding  extracellular region  nucleus  nucleoplasm  cytoplasm  visual perception  locomotory behavior  protein secretion  cell junction  AMPA glutamate receptor complex  positive regulation of smooth muscle cell differentiation  synaptic membrane  
Ontology : EGO-EBIprotein binding  extracellular region  nucleus  nucleoplasm  cytoplasm  visual perception  locomotory behavior  protein secretion  cell junction  AMPA glutamate receptor complex  positive regulation of smooth muscle cell differentiation  synaptic membrane  
NDEx NetworkOLFM2
Atlas of Cancer Signalling NetworkOLFM2
Wikipedia pathwaysOLFM2
Orthology - Evolution
OrthoDB93145
GeneTree (enSembl)ENSG00000105088
Phylogenetic Trees/Animal Genes : TreeFamOLFM2
HOVERGENO95897
HOGENOMO95897
Homologs : HomoloGeneOLFM2
Homology/Alignments : Family Browser (UCSC)OLFM2
Gene fusions - Rearrangements
Fusion: TCGAOLFM2 TBC1D21
Fusion: TCGAOLFM2 CEP112
Fusion: TCGAOLFM2 COL5A3
Fusion: TCGAOLFM2 TMEM205
Fusion: TCGAZNF121 OLFM2
Fusion: TCGACARM1 OLFM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOLFM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OLFM2
dbVarOLFM2
ClinVarOLFM2
1000_GenomesOLFM2 
Exome Variant ServerOLFM2
ExAC (Exome Aggregation Consortium)OLFM2 (select the gene name)
Genetic variants : HAPMAP93145
Genomic Variants (DGV)OLFM2 [DGVbeta]
DECIPHEROLFM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOLFM2 
Mutations
ICGC Data PortalOLFM2 
TCGA Data PortalOLFM2 
Broad Tumor PortalOLFM2
OASIS PortalOLFM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOLFM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOLFM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OLFM2
DgiDB (Drug Gene Interaction Database)OLFM2
DoCM (Curated mutations)OLFM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OLFM2 (select a term)
intoGenOLFM2
Cancer3DOLFM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOLFM2
Genetic Testing Registry OLFM2
NextProtO95897 [Medical]
TSGene93145
GENETestsOLFM2
Target ValidationOLFM2
Huge Navigator OLFM2 [HugePedia]
snp3D : Map Gene to Disease93145
BioCentury BCIQOLFM2
ClinGenOLFM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93145
Chemical/Pharm GKB GenePA31916
Clinical trialOLFM2
Miscellaneous
canSAR (ICR)OLFM2 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOLFM2
EVEXOLFM2
GoPubMedOLFM2
iHOPOLFM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:38 CEST 2017

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