Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OLFM3 (olfactomedin 3)

Identity

Alias_symbol (synonym)NOE3
Other aliasNOELIN3
OPTIMEDIN
HGNC (Hugo) OLFM3
LocusID (NCBI) 118427
Atlas_Id 52686
Location 1p21.1  [Link to chromosome band 1p21]
Location_base_pair Starts at 101802567 and ends at 101847080 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EFHD1 (2q37.1) / OLFM3 (1p21.1)OLFM3 (1p21.1) / RIMS1 (6q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OLFM3   17990
Cards
Entrez_Gene (NCBI)OLFM3  118427  olfactomedin 3
AliasesNOE3; NOELIN3; OPTIMEDIN
GeneCards (Weizmann)OLFM3
Ensembl hg19 (Hinxton)ENSG00000118733 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118733 [Gene_View]  chr1:101802567-101847080 [Contig_View]  OLFM3 [Vega]
ICGC DataPortalENSG00000118733
TCGA cBioPortalOLFM3
AceView (NCBI)OLFM3
Genatlas (Paris)OLFM3
WikiGenes118427
SOURCE (Princeton)OLFM3
Genetics Home Reference (NIH)OLFM3
Genomic and cartography
GoldenPath hg38 (UCSC)OLFM3  -     chr1:101802567-101847080 -  1p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OLFM3  -     1p21.1   [Description]    (hg19-Feb_2009)
EnsemblOLFM3 - 1p21.1 [CytoView hg19]  OLFM3 - 1p21.1 [CytoView hg38]
Mapping of homologs : NCBIOLFM3 [Mapview hg19]  OLFM3 [Mapview hg38]
OMIM607567   
Gene and transcription
Genbank (Entrez)AF397392 AF397393 AF397394 AF397395 AF397396
RefSeq transcript (Entrez)NM_001288821 NM_001288823 NM_058170
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OLFM3
Cluster EST : UnigeneHs.484475 [ NCBI ]
CGAP (NCI)Hs.484475
Alternative Splicing GalleryENSG00000118733
Gene ExpressionOLFM3 [ NCBI-GEO ]   OLFM3 [ EBI - ARRAY_EXPRESS ]   OLFM3 [ SEEK ]   OLFM3 [ MEM ]
Gene Expression Viewer (FireBrowse)OLFM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118427
GTEX Portal (Tissue expression)OLFM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PB7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PB7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PB7
Splice isoforms : SwissVarQ96PB7
PhosPhoSitePlusQ96PB7
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Noelin-3    Noelin_dom    Olfac-like_dom    Quino_amine_DH_bsu   
Domain families : Pfam (Sanger)Noelin-1 (PF12308)    OLF (PF02191)   
Domain families : Pfam (NCBI)pfam12308    pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
Conserved Domain (NCBI)OLFM3
DMDM Disease mutations118427
Blocks (Seattle)OLFM3
SuperfamilyQ96PB7
Human Protein AtlasENSG00000118733
Peptide AtlasQ96PB7
IPIIPI00000390   IPI00219998   IPI00219999   IPI00220000   IPI00220001   IPI00220003   IPI00902441   
Protein Interaction databases
DIP (DOE-UCLA)Q96PB7
IntAct (EBI)Q96PB7
FunCoupENSG00000118733
BioGRIDOLFM3
STRING (EMBL)OLFM3
ZODIACOLFM3
Ontologies - Pathways
QuickGOQ96PB7
Ontology : AmiGOprotein binding  extracellular space  Golgi apparatus  cell junction  AMPA glutamate receptor complex  eye photoreceptor cell development  synapse  
Ontology : EGO-EBIprotein binding  extracellular space  Golgi apparatus  cell junction  AMPA glutamate receptor complex  eye photoreceptor cell development  synapse  
NDEx NetworkOLFM3
Atlas of Cancer Signalling NetworkOLFM3
Wikipedia pathwaysOLFM3
Orthology - Evolution
OrthoDB118427
GeneTree (enSembl)ENSG00000118733
Phylogenetic Trees/Animal Genes : TreeFamOLFM3
HOVERGENQ96PB7
HOGENOMQ96PB7
Homologs : HomoloGeneOLFM3
Homology/Alignments : Family Browser (UCSC)OLFM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOLFM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OLFM3
dbVarOLFM3
ClinVarOLFM3
1000_GenomesOLFM3 
Exome Variant ServerOLFM3
ExAC (Exome Aggregation Consortium)OLFM3 (select the gene name)
Genetic variants : HAPMAP118427
Genomic Variants (DGV)OLFM3 [DGVbeta]
DECIPHEROLFM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOLFM3 
Mutations
ICGC Data PortalOLFM3 
TCGA Data PortalOLFM3 
Broad Tumor PortalOLFM3
OASIS PortalOLFM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOLFM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOLFM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OLFM3
DgiDB (Drug Gene Interaction Database)OLFM3
DoCM (Curated mutations)OLFM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OLFM3 (select a term)
intoGenOLFM3
Cancer3DOLFM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607567   
Orphanet
MedgenOLFM3
Genetic Testing Registry OLFM3
NextProtQ96PB7 [Medical]
TSGene118427
GENETestsOLFM3
Target ValidationOLFM3
Huge Navigator OLFM3 [HugePedia]
snp3D : Map Gene to Disease118427
BioCentury BCIQOLFM3
ClinGenOLFM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118427
Chemical/Pharm GKB GenePA31917
Clinical trialOLFM3
Miscellaneous
canSAR (ICR)OLFM3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOLFM3
EVEXOLFM3
GoPubMedOLFM3
iHOPOLFM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:47:55 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.