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OLFML1 (olfactomedin like 1)

Identity

Alias_namesolfactomedin-like 1
Alias_symbol (synonym)UNQ564
Other alias
HGNC (Hugo) OLFML1
LocusID (NCBI) 283298
Atlas_Id 56247
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 7485369 and ends at 7511375 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PPFIBP2 (11p15.4) / OLFML1 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  PPFIBP2/OLFML1 (11p15)


External links

Nomenclature
HGNC (Hugo)OLFML1   24473
Cards
Entrez_Gene (NCBI)OLFML1  283298  olfactomedin like 1
AliasesUNQ564
GeneCards (Weizmann)OLFML1
Ensembl hg19 (Hinxton)ENSG00000183801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183801 [Gene_View]  ENSG00000183801 [Sequence]  chr11:7485369-7511375 [Contig_View]  OLFML1 [Vega]
ICGC DataPortalENSG00000183801
TCGA cBioPortalOLFML1
AceView (NCBI)OLFML1
Genatlas (Paris)OLFML1
WikiGenes283298
SOURCE (Princeton)OLFML1
Genetics Home Reference (NIH)OLFML1
Genomic and cartography
GoldenPath hg38 (UCSC)OLFML1  -     chr11:7485369-7511375 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OLFML1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOLFML1 - 11p15.4 [CytoView hg19]  OLFML1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOLFML1 [Mapview hg19]  OLFML1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK297778 AK298137 AY358591 BC035895 BC092488
RefSeq transcript (Entrez)NM_198474
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OLFML1
Cluster EST : UnigeneHs.503500 [ NCBI ]
CGAP (NCI)Hs.503500
Alternative Splicing GalleryENSG00000183801
Gene ExpressionOLFML1 [ NCBI-GEO ]   OLFML1 [ EBI - ARRAY_EXPRESS ]   OLFML1 [ SEEK ]   OLFML1 [ MEM ]
Gene Expression Viewer (FireBrowse)OLFML1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283298
GTEX Portal (Tissue expression)OLFML1
Human Protein AtlasENSG00000183801-OLFML1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWY5
Splice isoforms : SwissVarQ6UWY5
PhosPhoSitePlusQ6UWY5
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Olfac-like_dom    OLFML1   
Domain families : Pfam (Sanger)OLF (PF02191)   
Domain families : Pfam (NCBI)pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
Conserved Domain (NCBI)OLFML1
DMDM Disease mutations283298
Blocks (Seattle)OLFML1
SuperfamilyQ6UWY5
Human Protein Atlas [tissue]ENSG00000183801-OLFML1 [tissue]
Peptide AtlasQ6UWY5
HPRD17661
IPIIPI00394820   IPI00977165   IPI00975990   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWY5
IntAct (EBI)Q6UWY5
FunCoupENSG00000183801
BioGRIDOLFML1
STRING (EMBL)OLFML1
ZODIACOLFML1
Ontologies - Pathways
QuickGOQ6UWY5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkOLFML1
Atlas of Cancer Signalling NetworkOLFML1
Wikipedia pathwaysOLFML1
Orthology - Evolution
OrthoDB283298
GeneTree (enSembl)ENSG00000183801
Phylogenetic Trees/Animal Genes : TreeFamOLFML1
HOVERGENQ6UWY5
HOGENOMQ6UWY5
Homologs : HomoloGeneOLFML1
Homology/Alignments : Family Browser (UCSC)OLFML1
Gene fusions - Rearrangements
Fusion : QuiverOLFML1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOLFML1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OLFML1
dbVarOLFML1
ClinVarOLFML1
1000_GenomesOLFML1 
Exome Variant ServerOLFML1
ExAC (Exome Aggregation Consortium)ENSG00000183801
GNOMAD BrowserENSG00000183801
Varsome BrowserOLFML1
Genetic variants : HAPMAP283298
Genomic Variants (DGV)OLFML1 [DGVbeta]
DECIPHEROLFML1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOLFML1 
Mutations
ICGC Data PortalOLFML1 
TCGA Data PortalOLFML1 
Broad Tumor PortalOLFML1
OASIS PortalOLFML1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOLFML1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOLFML1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OLFML1
DgiDB (Drug Gene Interaction Database)OLFML1
DoCM (Curated mutations)OLFML1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OLFML1 (select a term)
intoGenOLFML1
Cancer3DOLFML1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOLFML1
MedgenOLFML1
Genetic Testing Registry OLFML1
NextProtQ6UWY5 [Medical]
TSGene283298
GENETestsOLFML1
Target ValidationOLFML1
Huge Navigator OLFML1 [HugePedia]
snp3D : Map Gene to Disease283298
BioCentury BCIQOLFML1
ClinGenOLFML1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283298
Chemical/Pharm GKB GenePA134904379
Clinical trialOLFML1
Miscellaneous
canSAR (ICR)OLFML1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOLFML1
EVEXOLFML1
GoPubMedOLFML1
iHOPOLFML1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:27:39 CET 2018

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