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OLFML2A (olfactomedin like 2A)

Identity

Alias_namesolfactomedin-like 2A
Alias_symbol (synonym)FLJ00237
Other aliasPRO34319
HGNC (Hugo) OLFML2A
LocusID (NCBI) 169611
Atlas_Id 71115
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 124800874 and ends at 124814891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OLFML2A (9q33.3) / EIF5B (2q11.2)OLFML2A (9q33.3) / ESYT2 (7q36.3)OLFML2A (9q33.3) / PDLIM7 (5q35.3)
PEX12 (17q12) / OLFML2A (9q33.3)SEPT11 (4q21.1) / OLFML2A (9q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OLFML2A   27270
Cards
Entrez_Gene (NCBI)OLFML2A  169611  olfactomedin like 2A
AliasesPRO34319
GeneCards (Weizmann)OLFML2A
Ensembl hg19 (Hinxton)ENSG00000185585 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185585 [Gene_View]  chr9:124800874-124814891 [Contig_View]  OLFML2A [Vega]
ICGC DataPortalENSG00000185585
TCGA cBioPortalOLFML2A
AceView (NCBI)OLFML2A
Genatlas (Paris)OLFML2A
WikiGenes169611
SOURCE (Princeton)OLFML2A
Genetics Home Reference (NIH)OLFML2A
Genomic and cartography
GoldenPath hg38 (UCSC)OLFML2A  -     chr9:124800874-124814891 +  9q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OLFML2A  -     9q33.3   [Description]    (hg19-Feb_2009)
EnsemblOLFML2A - 9q33.3 [CytoView hg19]  OLFML2A - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIOLFML2A [Mapview hg19]  OLFML2A [Mapview hg38]
OMIM615899   
Gene and transcription
Genbank (Entrez)AB119055 AI141934 AK074164 AK074709 AK092255
RefSeq transcript (Entrez)NM_001282715 NM_182487
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OLFML2A
Cluster EST : UnigeneHs.357004 [ NCBI ]
CGAP (NCI)Hs.357004
Alternative Splicing GalleryENSG00000185585
Gene ExpressionOLFML2A [ NCBI-GEO ]   OLFML2A [ EBI - ARRAY_EXPRESS ]   OLFML2A [ SEEK ]   OLFML2A [ MEM ]
Gene Expression Viewer (FireBrowse)OLFML2A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169611
GTEX Portal (Tissue expression)OLFML2A
Human Protein AtlasENSG00000185585-OLFML2A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68BL7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68BL7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68BL7
Splice isoforms : SwissVarQ68BL7
PhosPhoSitePlusQ68BL7
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Olfac-like_dom    OLFML2A   
Domain families : Pfam (Sanger)OLF (PF02191)   
Domain families : Pfam (NCBI)pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
Conserved Domain (NCBI)OLFML2A
DMDM Disease mutations169611
Blocks (Seattle)OLFML2A
SuperfamilyQ68BL7
Human Protein Atlas [tissue]ENSG00000185585-OLFML2A [tissue]
Peptide AtlasQ68BL7
HPRD14876
IPIIPI00385326   IPI00871730   IPI00641492   IPI00555955   IPI00152733   IPI00184375   
Protein Interaction databases
DIP (DOE-UCLA)Q68BL7
IntAct (EBI)Q68BL7
FunCoupENSG00000185585
BioGRIDOLFML2A
STRING (EMBL)OLFML2A
ZODIACOLFML2A
Ontologies - Pathways
QuickGOQ68BL7
Ontology : AmiGOproteinaceous extracellular matrix  extracellular matrix organization  protein homodimerization activity  extracellular matrix binding  
Ontology : EGO-EBIproteinaceous extracellular matrix  extracellular matrix organization  protein homodimerization activity  extracellular matrix binding  
NDEx NetworkOLFML2A
Atlas of Cancer Signalling NetworkOLFML2A
Wikipedia pathwaysOLFML2A
Orthology - Evolution
OrthoDB169611
GeneTree (enSembl)ENSG00000185585
Phylogenetic Trees/Animal Genes : TreeFamOLFML2A
HOVERGENQ68BL7
HOGENOMQ68BL7
Homologs : HomoloGeneOLFML2A
Homology/Alignments : Family Browser (UCSC)OLFML2A
Gene fusions - Rearrangements
Fusion: Tumor Portal OLFML2A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOLFML2A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OLFML2A
dbVarOLFML2A
ClinVarOLFML2A
1000_GenomesOLFML2A 
Exome Variant ServerOLFML2A
ExAC (Exome Aggregation Consortium)ENSG00000185585
GNOMAD BrowserENSG00000185585
Genetic variants : HAPMAP169611
Genomic Variants (DGV)OLFML2A [DGVbeta]
DECIPHEROLFML2A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOLFML2A 
Mutations
ICGC Data PortalOLFML2A 
TCGA Data PortalOLFML2A 
Broad Tumor PortalOLFML2A
OASIS PortalOLFML2A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOLFML2A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOLFML2A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OLFML2A
DgiDB (Drug Gene Interaction Database)OLFML2A
DoCM (Curated mutations)OLFML2A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OLFML2A (select a term)
intoGenOLFML2A
Cancer3DOLFML2A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615899   
Orphanet
MedgenOLFML2A
Genetic Testing Registry OLFML2A
NextProtQ68BL7 [Medical]
TSGene169611
GENETestsOLFML2A
Target ValidationOLFML2A
Huge Navigator OLFML2A [HugePedia]
snp3D : Map Gene to Disease169611
BioCentury BCIQOLFML2A
ClinGenOLFML2A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169611
Chemical/Pharm GKB GenePA134967883
Clinical trialOLFML2A
Miscellaneous
canSAR (ICR)OLFML2A (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOLFML2A
EVEXOLFML2A
GoPubMedOLFML2A
iHOPOLFML2A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:19:50 CET 2017

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