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OLFML2B (olfactomedin like 2B)

Identity

Alias_namesolfactomedin-like 2B
Alias_symbol (synonym)DKFZP586L151
Other alias-
HGNC (Hugo) OLFML2B
LocusID (NCBI) 25903
Atlas_Id 71116
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161983192 and ends at 162024465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CTNNB1 (3p22.1) / OLFML2B (1q23.3)PHKA1 (Xq13.1) / OLFML2B (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OLFML2B   24558
Cards
Entrez_Gene (NCBI)OLFML2B  25903  olfactomedin like 2B
Aliases
GeneCards (Weizmann)OLFML2B
Ensembl hg19 (Hinxton)ENSG00000162745 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162745 [Gene_View]  chr1:161983192-162024465 [Contig_View]  OLFML2B [Vega]
ICGC DataPortalENSG00000162745
TCGA cBioPortalOLFML2B
AceView (NCBI)OLFML2B
Genatlas (Paris)OLFML2B
WikiGenes25903
SOURCE (Princeton)OLFML2B
Genetics Home Reference (NIH)OLFML2B
Genomic and cartography
GoldenPath hg38 (UCSC)OLFML2B  -     chr1:161983192-162024465 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OLFML2B  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblOLFML2B - 1q23.3 [CytoView hg19]  OLFML2B - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIOLFML2B [Mapview hg19]  OLFML2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB119054 AK301499 AK316154 AL050137 BC047472
RefSeq transcript (Entrez)NM_001297713 NM_001347700 NM_015441
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OLFML2B
Cluster EST : UnigeneHs.507515 [ NCBI ]
CGAP (NCI)Hs.507515
Alternative Splicing GalleryENSG00000162745
Gene ExpressionOLFML2B [ NCBI-GEO ]   OLFML2B [ EBI - ARRAY_EXPRESS ]   OLFML2B [ SEEK ]   OLFML2B [ MEM ]
Gene Expression Viewer (FireBrowse)OLFML2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25903
GTEX Portal (Tissue expression)OLFML2B
Human Protein AtlasENSG00000162745-OLFML2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68BL8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68BL8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68BL8
Splice isoforms : SwissVarQ68BL8
PhosPhoSitePlusQ68BL8
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Olfac-like_dom    OLFML2B   
Domain families : Pfam (Sanger)OLF (PF02191)   
Domain families : Pfam (NCBI)pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
Conserved Domain (NCBI)OLFML2B
DMDM Disease mutations25903
Blocks (Seattle)OLFML2B
SuperfamilyQ68BL8
Human Protein Atlas [tissue]ENSG00000162745-OLFML2B [tissue]
Peptide AtlasQ68BL8
HPRD14877
IPIIPI00470766   IPI00641823   IPI01015209   IPI00977748   IPI00943046   
Protein Interaction databases
DIP (DOE-UCLA)Q68BL8
IntAct (EBI)Q68BL8
FunCoupENSG00000162745
BioGRIDOLFML2B
STRING (EMBL)OLFML2B
ZODIACOLFML2B
Ontologies - Pathways
QuickGOQ68BL8
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkOLFML2B
Atlas of Cancer Signalling NetworkOLFML2B
Wikipedia pathwaysOLFML2B
Orthology - Evolution
OrthoDB25903
GeneTree (enSembl)ENSG00000162745
Phylogenetic Trees/Animal Genes : TreeFamOLFML2B
HOVERGENQ68BL8
HOGENOMQ68BL8
Homologs : HomoloGeneOLFML2B
Homology/Alignments : Family Browser (UCSC)OLFML2B
Gene fusions - Rearrangements
Tumor Fusion PortalOLFML2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOLFML2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OLFML2B
dbVarOLFML2B
ClinVarOLFML2B
1000_GenomesOLFML2B 
Exome Variant ServerOLFML2B
ExAC (Exome Aggregation Consortium)ENSG00000162745
GNOMAD BrowserENSG00000162745
Genetic variants : HAPMAP25903
Genomic Variants (DGV)OLFML2B [DGVbeta]
DECIPHEROLFML2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOLFML2B 
Mutations
ICGC Data PortalOLFML2B 
TCGA Data PortalOLFML2B 
Broad Tumor PortalOLFML2B
OASIS PortalOLFML2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOLFML2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOLFML2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OLFML2B
DgiDB (Drug Gene Interaction Database)OLFML2B
DoCM (Curated mutations)OLFML2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OLFML2B (select a term)
intoGenOLFML2B
Cancer3DOLFML2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOLFML2B
MedgenOLFML2B
Genetic Testing Registry OLFML2B
NextProtQ68BL8 [Medical]
TSGene25903
GENETestsOLFML2B
Target ValidationOLFML2B
Huge Navigator OLFML2B [HugePedia]
snp3D : Map Gene to Disease25903
BioCentury BCIQOLFML2B
ClinGenOLFML2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25903
Chemical/Pharm GKB GenePA134990758
Clinical trialOLFML2B
Miscellaneous
canSAR (ICR)OLFML2B (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOLFML2B
EVEXOLFML2B
GoPubMedOLFML2B
iHOPOLFML2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:02:01 CET 2017

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