Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OLIG3 (oligodendrocyte transcription factor 3)

Identity

Alias_symbol (synonym)Bhlhb7
bHLHe20
Other alias
HGNC (Hugo) OLIG3
LocusID (NCBI) 167826
Atlas_Id 71118
Location 6q23.3  [Link to chromosome band 6q23]
Location_base_pair Starts at 137492199 and ends at 137494394 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OLIG3   18003
Cards
Entrez_Gene (NCBI)OLIG3  167826  oligodendrocyte transcription factor 3
AliasesBhlhb7; bHLHe20
GeneCards (Weizmann)OLIG3
Ensembl hg19 (Hinxton)ENSG00000177468 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177468 [Gene_View]  chr6:137492199-137494394 [Contig_View]  OLIG3 [Vega]
ICGC DataPortalENSG00000177468
TCGA cBioPortalOLIG3
AceView (NCBI)OLIG3
Genatlas (Paris)OLIG3
WikiGenes167826
SOURCE (Princeton)OLIG3
Genetics Home Reference (NIH)OLIG3
Genomic and cartography
GoldenPath hg38 (UCSC)OLIG3  -     chr6:137492199-137494394 -  6q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OLIG3  -     6q23.3   [Description]    (hg19-Feb_2009)
EnsemblOLIG3 - 6q23.3 [CytoView hg19]  OLIG3 - 6q23.3 [CytoView hg38]
Mapping of homologs : NCBIOLIG3 [Mapview hg19]  OLIG3 [Mapview hg38]
OMIM609323   
Gene and transcription
Genbank (Entrez)AK096362 BC051352 EU446887
RefSeq transcript (Entrez)NM_175747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OLIG3
Cluster EST : UnigeneHs.195398 [ NCBI ]
CGAP (NCI)Hs.195398
Alternative Splicing GalleryENSG00000177468
Gene ExpressionOLIG3 [ NCBI-GEO ]   OLIG3 [ EBI - ARRAY_EXPRESS ]   OLIG3 [ SEEK ]   OLIG3 [ MEM ]
Gene Expression Viewer (FireBrowse)OLIG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)167826
GTEX Portal (Tissue expression)OLIG3
Human Protein AtlasENSG00000177468-OLIG3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTU3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTU3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTU3
Splice isoforms : SwissVarQ7RTU3
PhosPhoSitePlusQ7RTU3
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)bHLH_dom    Olig3   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)OLIG3
DMDM Disease mutations167826
Blocks (Seattle)OLIG3
SuperfamilyQ7RTU3
Human Protein Atlas [tissue]ENSG00000177468-OLIG3 [tissue]
Peptide AtlasQ7RTU3
HPRD17662
IPIIPI00167528   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTU3
IntAct (EBI)Q7RTU3
FunCoupENSG00000177468
BioGRIDOLIG3
STRING (EMBL)OLIG3
ZODIACOLIG3
Ontologies - Pathways
QuickGOQ7RTU3
Ontology : AmiGO###############################################################################################################################################################################################################################################################                  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                  
NDEx NetworkOLIG3
Atlas of Cancer Signalling NetworkOLIG3
Wikipedia pathwaysOLIG3
Orthology - Evolution
OrthoDB167826
GeneTree (enSembl)ENSG00000177468
Phylogenetic Trees/Animal Genes : TreeFamOLIG3
HOVERGENQ7RTU3
HOGENOMQ7RTU3
Homologs : HomoloGeneOLIG3
Homology/Alignments : Family Browser (UCSC)OLIG3
Gene fusions - Rearrangements
Fusion : QuiverOLIG3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOLIG3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OLIG3
dbVarOLIG3
ClinVarOLIG3
1000_GenomesOLIG3 
Exome Variant ServerOLIG3
ExAC (Exome Aggregation Consortium)ENSG00000177468
GNOMAD BrowserENSG00000177468
Genetic variants : HAPMAP167826
Genomic Variants (DGV)OLIG3 [DGVbeta]
DECIPHEROLIG3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOLIG3 
Mutations
ICGC Data PortalOLIG3 
TCGA Data PortalOLIG3 
Broad Tumor PortalOLIG3
OASIS PortalOLIG3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOLIG3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOLIG3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OLIG3
DgiDB (Drug Gene Interaction Database)OLIG3
DoCM (Curated mutations)OLIG3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OLIG3 (select a term)
intoGenOLIG3
Cancer3DOLIG3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609323   
Orphanet
DisGeNETOLIG3
MedgenOLIG3
Genetic Testing Registry OLIG3
NextProtQ7RTU3 [Medical]
TSGene167826
GENETestsOLIG3
Target ValidationOLIG3
Huge Navigator OLIG3 [HugePedia]
snp3D : Map Gene to Disease167826
BioCentury BCIQOLIG3
ClinGenOLIG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD167826
Chemical/Pharm GKB GenePA134945348
Clinical trialOLIG3
Miscellaneous
canSAR (ICR)OLIG3 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOLIG3
EVEXOLIG3
GoPubMedOLIG3
iHOPOLIG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:45:18 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.