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OMA1 (OMA1 zinc metallopeptidase)

Identity

Alias_namesOMA1 zinc metallopeptidase homolog (S. cerevisiae)
Alias_symbol (synonym)MPRP-1
YKR087C
ZMPOMA1
FLJ33782
Other alias2010001O09Rik
DAB1
peptidase
HGNC (Hugo) OMA1
LocusID (NCBI) 115209
Atlas_Id 53667
Location 1p32.2  [Link to chromosome band 1p32]
Location_base_pair Starts at 58946391 and ends at 59012471 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TACSTD2 (1p32.1) / OMA1 (1p32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OMA1   29661
Cards
Entrez_Gene (NCBI)OMA1  115209  OMA1 zinc metallopeptidase
Aliases2010001O09Rik; DAB1; MPRP-1; YKR087C; 
ZMPOMA1; peptidase
GeneCards (Weizmann)OMA1
Ensembl hg19 (Hinxton)ENSG00000162600 [Gene_View]  chr1:58946391-59012471 [Contig_View]  OMA1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000162600 [Gene_View]  chr1:58946391-59012471 [Contig_View]  OMA1 [Vega]
ICGC DataPortalENSG00000162600
TCGA cBioPortalOMA1
AceView (NCBI)OMA1
Genatlas (Paris)OMA1
WikiGenes115209
SOURCE (Princeton)OMA1
Genetics Home Reference (NIH)OMA1
Genomic and cartography
GoldenPath hg19 (UCSC)OMA1  -     chr1:58946391-59012471 -  1p32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OMA1  -     1p32.2   [Description]    (hg38-Dec_2013)
EnsemblOMA1 - 1p32.2 [CytoView hg19]  OMA1 - 1p32.2 [CytoView hg38]
Mapping of homologs : NCBIOMA1 [Mapview hg19]  OMA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB048348 AK091101 AK308847 BC012915 BU191827
RefSeq transcript (Entrez)NM_145243
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)OMA1
Cluster EST : UnigeneHs.425769 [ NCBI ]
CGAP (NCI)Hs.425769
Alternative Splicing GalleryENSG00000162600
Gene ExpressionOMA1 [ NCBI-GEO ]   OMA1 [ EBI - ARRAY_EXPRESS ]   OMA1 [ SEEK ]   OMA1 [ MEM ]
Gene Expression Viewer (FireBrowse)OMA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115209
GTEX Portal (Tissue expression)OMA1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E52
Splice isoforms : SwissVarQ96E52
Catalytic activity : Enzyme3.4.24.- [ Enzyme-Expasy ]   3.4.24.-3.4.24.- [ IntEnz-EBI ]   3.4.24.- [ BRENDA ]   3.4.24.- [ KEGG ]   
PhosPhoSitePlusQ96E52
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)Peptidase_M48   
Domain families : Pfam (Sanger)Peptidase_M48 (PF01435)   
Domain families : Pfam (NCBI)pfam01435   
Conserved Domain (NCBI)OMA1
DMDM Disease mutations115209
Blocks (Seattle)OMA1
SuperfamilyQ96E52
Human Protein AtlasENSG00000162600
Peptide AtlasQ96E52
HPRD14879
IPIIPI00061229   IPI00168213   IPI00643448   IPI00644816   IPI00640428   IPI00641058   
Protein Interaction databases
DIP (DOE-UCLA)Q96E52
IntAct (EBI)Q96E52
FunCoupENSG00000162600
BioGRIDOMA1
STRING (EMBL)OMA1
ZODIACOMA1
Ontologies - Pathways
QuickGOQ96E52
Ontology : AmiGOdiet induced thermogenesis  metalloendopeptidase activity  mitochondrial inner membrane  glucose metabolic process  misfolded or incompletely synthesized protein catabolic process  lipid metabolic process  response to stress  negative regulation of mitochondrial fusion  integral component of membrane  mitochondrial membrane  mitochondrial protein processing  cristae formation  metal ion binding  energy homeostasis  
Ontology : EGO-EBIdiet induced thermogenesis  metalloendopeptidase activity  mitochondrial inner membrane  glucose metabolic process  misfolded or incompletely synthesized protein catabolic process  lipid metabolic process  response to stress  negative regulation of mitochondrial fusion  integral component of membrane  mitochondrial membrane  mitochondrial protein processing  cristae formation  metal ion binding  energy homeostasis  
NDEx NetworkOMA1
Atlas of Cancer Signalling NetworkOMA1
Wikipedia pathwaysOMA1
Orthology - Evolution
OrthoDB115209
GeneTree (enSembl)ENSG00000162600
Phylogenetic Trees/Animal Genes : TreeFamOMA1
HOVERGENQ96E52
HOGENOMQ96E52
Homologs : HomoloGeneOMA1
Homology/Alignments : Family Browser (UCSC)OMA1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOMA1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OMA1
dbVarOMA1
ClinVarOMA1
1000_GenomesOMA1 
Exome Variant ServerOMA1
ExAC (Exome Aggregation Consortium)OMA1 (select the gene name)
Genetic variants : HAPMAP115209
Genomic Variants (DGV)OMA1 [DGVbeta]
DECIPHER (Syndromes)1:58946391-59012471  ENSG00000162600
CONAN: Copy Number AnalysisOMA1 
Mutations
ICGC Data PortalOMA1 
TCGA Data PortalOMA1 
Broad Tumor PortalOMA1
OASIS PortalOMA1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOMA1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOMA1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch OMA1
DgiDB (Drug Gene Interaction Database)OMA1
DoCM (Curated mutations)OMA1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OMA1 (select a term)
intoGenOMA1
Cancer3DOMA1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOMA1
Genetic Testing Registry OMA1
NextProtQ96E52 [Medical]
TSGene115209
GENETestsOMA1
Huge Navigator OMA1 [HugePedia]
snp3D : Map Gene to Disease115209
BioCentury BCIQOMA1
ClinGenOMA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115209
Chemical/Pharm GKB GenePA134911478
Clinical trialOMA1
Miscellaneous
canSAR (ICR)OMA1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOMA1
EVEXOMA1
GoPubMedOMA1
iHOPOMA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:13:04 CEST 2017

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