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OMD (osteomodulin)

Identity

Alias_symbol (synonym)osteoadherin
SLRR2C
Other aliasOSAD
HGNC (Hugo) OMD
LocusID (NCBI) 4958
Atlas_Id 42962
Location 9q22.31  [Link to chromosome band 9q22]
Location_base_pair Starts at 95176527 and ends at 95186836 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
OMD (9q22.31) / USP6 (17p13.2)USP6 (17p13.2) / OMD (9q22.31)OMD 9q22.31 / USP6 17p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Bone: Aneurysmal bone cysts
Bone: Aneurysmal bone cyst with t(9;17)(q22;p13) OMD/USP6


External links

Nomenclature
HGNC (Hugo)OMD   8134
Cards
Entrez_Gene (NCBI)OMD  4958  osteomodulin
AliasesOSAD; SLRR2C
GeneCards (Weizmann)OMD
Ensembl hg19 (Hinxton)ENSG00000127083 [Gene_View]  chr9:95176527-95186836 [Contig_View]  OMD [Vega]
Ensembl hg38 (Hinxton)ENSG00000127083 [Gene_View]  chr9:95176527-95186836 [Contig_View]  OMD [Vega]
ICGC DataPortalENSG00000127083
TCGA cBioPortalOMD
AceView (NCBI)OMD
Genatlas (Paris)OMD
WikiGenes4958
SOURCE (Princeton)OMD
Genetics Home Reference (NIH)OMD
Genomic and cartography
GoldenPath hg19 (UCSC)OMD  -     chr9:95176527-95186836 -  9q22.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OMD  -     9q22.31   [Description]    (hg38-Dec_2013)
EnsemblOMD - 9q22.31 [CytoView hg19]  OMD - 9q22.31 [CytoView hg38]
Mapping of homologs : NCBIOMD [Mapview hg19]  OMD [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB000114 AK225922 AK313055 AY358872 BC046356
RefSeq transcript (Entrez)NM_005014
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)OMD
Cluster EST : UnigeneHs.94070 [ NCBI ]
CGAP (NCI)Hs.94070
Alternative Splicing GalleryENSG00000127083
Gene ExpressionOMD [ NCBI-GEO ]   OMD [ EBI - ARRAY_EXPRESS ]   OMD [ SEEK ]   OMD [ MEM ]
Gene Expression Viewer (FireBrowse)OMD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4958
GTEX Portal (Tissue expression)OMD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99983   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99983  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99983
Splice isoforms : SwissVarQ99983
PhosPhoSitePlusQ99983
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT    Osteomodulin   
Domain families : Pfam (Sanger)LRR_8 (PF13855)   
Domain families : Pfam (NCBI)pfam13855   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRNT (SM00013)  
Conserved Domain (NCBI)OMD
DMDM Disease mutations4958
Blocks (Seattle)OMD
SuperfamilyQ99983
Human Protein AtlasENSG00000127083
Peptide AtlasQ99983
HPRD10128
IPIIPI00020990   
Protein Interaction databases
DIP (DOE-UCLA)Q99983
IntAct (EBI)Q99983
FunCoupENSG00000127083
BioGRIDOMD
STRING (EMBL)OMD
ZODIACOMD
Ontologies - Pathways
QuickGOQ99983
Ontology : AmiGOextracellular region  proteinaceous extracellular matrix  extracellular space  Golgi lumen  cell adhesion  axonogenesis  keratan sulfate biosynthetic process  regulation of bone mineralization  keratan sulfate catabolic process  lysosomal lumen  extracellular exosome  
Ontology : EGO-EBIextracellular region  proteinaceous extracellular matrix  extracellular space  Golgi lumen  cell adhesion  axonogenesis  keratan sulfate biosynthetic process  regulation of bone mineralization  keratan sulfate catabolic process  lysosomal lumen  extracellular exosome  
NDEx NetworkOMD
Atlas of Cancer Signalling NetworkOMD
Wikipedia pathwaysOMD
Orthology - Evolution
OrthoDB4958
GeneTree (enSembl)ENSG00000127083
Phylogenetic Trees/Animal Genes : TreeFamOMD
HOVERGENQ99983
HOGENOMQ99983
Homologs : HomoloGeneOMD
Homology/Alignments : Family Browser (UCSC)OMD
Gene fusions - Rearrangements
Fusion : MitelmanOMD/USP6 [9q22.31/17p13.2]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOMD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OMD
dbVarOMD
ClinVarOMD
1000_GenomesOMD 
Exome Variant ServerOMD
ExAC (Exome Aggregation Consortium)OMD (select the gene name)
Genetic variants : HAPMAP4958
Genomic Variants (DGV)OMD [DGVbeta]
DECIPHER (Syndromes)9:95176527-95186836  ENSG00000127083
CONAN: Copy Number AnalysisOMD 
Mutations
ICGC Data PortalOMD 
TCGA Data PortalOMD 
Broad Tumor PortalOMD
OASIS PortalOMD [ Somatic mutations - Copy number]
Cancer Gene: CensusOMD 
Somatic Mutations in Cancer : COSMICOMD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOMD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OMD
DgiDB (Drug Gene Interaction Database)OMD
DoCM (Curated mutations)OMD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OMD (select a term)
intoGenOMD
Cancer3DOMD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOMD
Genetic Testing Registry OMD
NextProtQ99983 [Medical]
TSGene4958
GENETestsOMD
Huge Navigator OMD [HugePedia]
snp3D : Map Gene to Disease4958
BioCentury BCIQOMD
ClinGenOMD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4958
Chemical/Pharm GKB GenePA31921
Clinical trialOMD
Miscellaneous
canSAR (ICR)OMD (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOMD
EVEXOMD
GoPubMedOMD
iHOPOMD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:49 CET 2017

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