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OMG (oligodendrocyte myelin glycoprotein)

Identity

Alias_symbol (synonym)OMGP
Other alias
HGNC (Hugo) OMG
LocusID (NCBI) 4974
Atlas_Id 41608
Location 17q11.2  [Link to chromosome band 17q11]
Location_base_pair Starts at 29621668 and ends at 29624380 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
OMG (17q11.2) / NF1 (17q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Head and Neck: Iris Hamartomas


External links

Nomenclature
HGNC (Hugo)OMG   8135
Cards
Entrez_Gene (NCBI)OMG  4974  oligodendrocyte myelin glycoprotein
AliasesOMGP
GeneCards (Weizmann)OMG
Ensembl hg19 (Hinxton)ENSG00000126861 [Gene_View]  chr17:29621668-29624380 [Contig_View]  OMG [Vega]
Ensembl hg38 (Hinxton)ENSG00000126861 [Gene_View]  chr17:29621668-29624380 [Contig_View]  OMG [Vega]
ICGC DataPortalENSG00000126861
TCGA cBioPortalOMG
AceView (NCBI)OMG
Genatlas (Paris)OMG
WikiGenes4974
SOURCE (Princeton)OMG
Genetics Home Reference (NIH)OMG
Genomic and cartography
GoldenPath hg19 (UCSC)OMG  -     chr17:29621668-29624380 -  17q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OMG  -     17q11.2   [Description]    (hg38-Dec_2013)
EnsemblOMG - 17q11.2 [CytoView hg19]  OMG - 17q11.2 [CytoView hg38]
Mapping of homologs : NCBIOMG [Mapview hg19]  OMG [Mapview hg38]
OMIM164345   
Gene and transcription
Genbank (Entrez)AK222663 AK312445 BC018050 BG704091 DA206834
RefSeq transcript (Entrez)NM_002544
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_009018 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)OMG
Cluster EST : UnigeneHs.113874 [ NCBI ]
CGAP (NCI)Hs.113874
Alternative Splicing GalleryENSG00000126861
Gene ExpressionOMG [ NCBI-GEO ]   OMG [ EBI - ARRAY_EXPRESS ]   OMG [ SEEK ]   OMG [ MEM ]
Gene Expression Viewer (FireBrowse)OMG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4974
GTEX Portal (Tissue expression)OMG
Protein : pattern, domain, 3D structure
UniProt/SwissProtP23515   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP23515  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP23515
Splice isoforms : SwissVarP23515
PhosPhoSitePlusP23515
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)L_dom-like    Leu-rich_rpt    Leu-rich_rpt_typical-subtyp    LRRNT   
Domain families : Pfam (Sanger)LRR_1 (PF00560)    LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam00560    pfam13855    pfam01462   
Domain families : Smart (EMBL)LRR_TYP (SM00369)  LRRNT (SM00013)  
Conserved Domain (NCBI)OMG
DMDM Disease mutations4974
Blocks (Seattle)OMG
SuperfamilyP23515
Human Protein AtlasENSG00000126861
Peptide AtlasP23515
HPRD01257
IPIIPI00295832   
Protein Interaction databases
DIP (DOE-UCLA)P23515
IntAct (EBI)P23515
FunCoupENSG00000126861
BioGRIDOMG
STRING (EMBL)OMG
ZODIACOMG
Ontologies - Pathways
QuickGOP23515
Ontology : AmiGOplasma membrane  cell adhesion  axonogenesis  anchored component of membrane  negative regulation of axonogenesis  
Ontology : EGO-EBIplasma membrane  cell adhesion  axonogenesis  anchored component of membrane  negative regulation of axonogenesis  
NDEx NetworkOMG
Atlas of Cancer Signalling NetworkOMG
Wikipedia pathwaysOMG
Orthology - Evolution
OrthoDB4974
GeneTree (enSembl)ENSG00000126861
Phylogenetic Trees/Animal Genes : TreeFamOMG
HOVERGENP23515
HOGENOMP23515
Homologs : HomoloGeneOMG
Homology/Alignments : Family Browser (UCSC)OMG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOMG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OMG
dbVarOMG
ClinVarOMG
1000_GenomesOMG 
Exome Variant ServerOMG
ExAC (Exome Aggregation Consortium)OMG (select the gene name)
Genetic variants : HAPMAP4974
Genomic Variants (DGV)OMG [DGVbeta]
DECIPHER (Syndromes)17:29621668-29624380  ENSG00000126861
CONAN: Copy Number AnalysisOMG 
Mutations
ICGC Data PortalOMG 
TCGA Data PortalOMG 
Broad Tumor PortalOMG
OASIS PortalOMG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOMG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOMG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OMG
DgiDB (Drug Gene Interaction Database)OMG
DoCM (Curated mutations)OMG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OMG (select a term)
intoGenOMG
Cancer3DOMG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM164345   
Orphanet
MedgenOMG
Genetic Testing Registry OMG
NextProtP23515 [Medical]
TSGene4974
GENETestsOMG
Huge Navigator OMG [HugePedia]
snp3D : Map Gene to Disease4974
BioCentury BCIQOMG
ClinGenOMG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4974
Chemical/Pharm GKB GenePA31922
Clinical trialOMG
Miscellaneous
canSAR (ICR)OMG (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOMG
EVEXOMG
GoPubMedOMG
iHOPOMG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:19:49 CET 2017

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