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OMP (olfactory marker protein)

Identity

Other alias-
HGNC (Hugo) OMP
LocusID (NCBI) 4975
Atlas_Id 71119
Location 11q13.5  [Link to chromosome band 11q13]
Location_base_pair Starts at 77102840 and ends at 77103331 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OMP   8136
Cards
Entrez_Gene (NCBI)OMP  4975  olfactory marker protein
Aliases
GeneCards (Weizmann)OMP
Ensembl hg19 (Hinxton)ENSG00000254550 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254550 [Gene_View]  chr11:77102840-77103331 [Contig_View]  OMP [Vega]
ICGC DataPortalENSG00000254550
TCGA cBioPortalOMP
AceView (NCBI)OMP
Genatlas (Paris)OMP
WikiGenes4975
SOURCE (Princeton)OMP
Genetics Home Reference (NIH)OMP
Genomic and cartography
GoldenPath hg38 (UCSC)OMP  -     chr11:77102840-77103331 +  11q13.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OMP  -     11q13.5   [Description]    (hg19-Feb_2009)
EnsemblOMP - 11q13.5 [CytoView hg19]  OMP - 11q13.5 [CytoView hg38]
Mapping of homologs : NCBIOMP [Mapview hg19]  OMP [Mapview hg38]
OMIM164340   
Gene and transcription
Genbank (Entrez)BC069115 BC069365 HQ448416
RefSeq transcript (Entrez)NM_006189
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OMP
Cluster EST : UnigeneHs.673853 [ NCBI ]
CGAP (NCI)Hs.673853
Alternative Splicing GalleryENSG00000254550
Gene ExpressionOMP [ NCBI-GEO ]   OMP [ EBI - ARRAY_EXPRESS ]   OMP [ SEEK ]   OMP [ MEM ]
Gene Expression Viewer (FireBrowse)OMP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4975
GTEX Portal (Tissue expression)OMP
Human Protein AtlasENSG00000254550-OMP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47874   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP47874  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP47874
Splice isoforms : SwissVarP47874
PhosPhoSitePlusP47874
Domains : Interpro (EBI)Olfactory_marker   
Domain families : Pfam (Sanger)Olfactory_mark (PF06554)   
Domain families : Pfam (NCBI)pfam06554   
Domain structure : Prodom (Prabi Lyon)Olfactory_marker (PD022055)   
Conserved Domain (NCBI)OMP
DMDM Disease mutations4975
Blocks (Seattle)OMP
SuperfamilyP47874
Human Protein Atlas [tissue]ENSG00000254550-OMP [tissue]
Peptide AtlasP47874
HPRD01254
IPIIPI00220343   
Protein Interaction databases
DIP (DOE-UCLA)P47874
IntAct (EBI)P47874
FunCoupENSG00000254550
BioGRIDOMP
STRING (EMBL)OMP
ZODIACOMP
Ontologies - Pathways
QuickGOP47874
Ontology : AmiGOsignal transducer activity  nucleus  cytosol  signal transduction  chemical synaptic transmission  sensory perception of smell  neurogenesis  axon  neuronal cell body  
Ontology : EGO-EBIsignal transducer activity  nucleus  cytosol  signal transduction  chemical synaptic transmission  sensory perception of smell  neurogenesis  axon  neuronal cell body  
NDEx NetworkOMP
Atlas of Cancer Signalling NetworkOMP
Wikipedia pathwaysOMP
Orthology - Evolution
OrthoDB4975
GeneTree (enSembl)ENSG00000254550
Phylogenetic Trees/Animal Genes : TreeFamOMP
HOVERGENP47874
HOGENOMP47874
Homologs : HomoloGeneOMP
Homology/Alignments : Family Browser (UCSC)OMP
Gene fusions - Rearrangements
Tumor Fusion PortalOMP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOMP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OMP
dbVarOMP
ClinVarOMP
1000_GenomesOMP 
Exome Variant ServerOMP
ExAC (Exome Aggregation Consortium)ENSG00000254550
GNOMAD BrowserENSG00000254550
Genetic variants : HAPMAP4975
Genomic Variants (DGV)OMP [DGVbeta]
DECIPHEROMP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOMP 
Mutations
ICGC Data PortalOMP 
TCGA Data PortalOMP 
Broad Tumor PortalOMP
OASIS PortalOMP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOMP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOMP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OMP
DgiDB (Drug Gene Interaction Database)OMP
DoCM (Curated mutations)OMP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OMP (select a term)
intoGenOMP
Cancer3DOMP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM164340   
Orphanet
DisGeNETOMP
MedgenOMP
Genetic Testing Registry OMP
NextProtP47874 [Medical]
TSGene4975
GENETestsOMP
Target ValidationOMP
Huge Navigator OMP [HugePedia]
snp3D : Map Gene to Disease4975
BioCentury BCIQOMP
ClinGenOMP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4975
Chemical/Pharm GKB GenePA31923
Clinical trialOMP
Miscellaneous
canSAR (ICR)OMP (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOMP
EVEXOMP
GoPubMedOMP
iHOPOMP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:24:19 CET 2017

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