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OOEP (oocyte expressed protein)

Identity

Alias_namesC6orf156
chromosome 6 open reading frame 156
oocyte expressed protein homolog (dog)
Alias_symbol (synonym)Em:AC019205.2
KHDC2
Other aliasFLOPED
HOEP19
HGNC (Hugo) OOEP
LocusID (NCBI) 441161
Atlas_Id 71121
Location 6q13  [Link to chromosome band 6q13]
Location_base_pair Starts at 73368557 and ends at 73369792 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EEF1G (11q12.3) / OOEP (6q13)KHDC1 (6q13) / OOEP (6q13)OOEP (6q13) / EIF3A (10q26.11)
SENP6 (6q14.1) / OOEP (6q13)KHDC1 OOEPSENP6 OOEP

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;11)(q13;q12) EEF1G/OOEP
t(6;11)(q13;q12) EEF1G/OOEP


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q13;q14) SENP6/OOEP


External links

Nomenclature
HGNC (Hugo)OOEP   21382
Cards
Entrez_Gene (NCBI)OOEP  441161  oocyte expressed protein
AliasesC6orf156; FLOPED; HOEP19; KHDC2
GeneCards (Weizmann)OOEP
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:73368557-73369792 [Contig_View]  OOEP [Vega]
TCGA cBioPortalOOEP
AceView (NCBI)OOEP
Genatlas (Paris)OOEP
WikiGenes441161
SOURCE (Princeton)OOEP
Genetics Home Reference (NIH)OOEP
Genomic and cartography
GoldenPath hg38 (UCSC)OOEP  -     chr6:73368557-73369792 -  6q13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OOEP  -     6q13   [Description]    (hg19-Feb_2009)
EnsemblOOEP - 6q13 [CytoView hg19]  OOEP - 6q13 [CytoView hg38]
Mapping of homologs : NCBIOOEP [Mapview hg19]  OOEP [Mapview hg38]
OMIM611689   
Gene and transcription
Genbank (Entrez)BC024931 BX093821 EU290647
RefSeq transcript (Entrez)NM_001080507
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OOEP
Cluster EST : UnigeneHs.671212 [ NCBI ]
CGAP (NCI)Hs.671212
Gene ExpressionOOEP [ NCBI-GEO ]   OOEP [ EBI - ARRAY_EXPRESS ]   OOEP [ SEEK ]   OOEP [ MEM ]
Gene Expression Viewer (FireBrowse)OOEP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441161
GTEX Portal (Tissue expression)OOEP
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGQ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGQ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGQ2
Splice isoforms : SwissVarA6NGQ2
PhosPhoSitePlusA6NGQ2
Domains : Interpro (EBI)MOEP19_KH-like   
Domain families : Pfam (Sanger)MOEP19 (PF16005)   
Domain families : Pfam (NCBI)pfam16005   
Conserved Domain (NCBI)OOEP
DMDM Disease mutations441161
Blocks (Seattle)OOEP
SuperfamilyA6NGQ2
Peptide AtlasA6NGQ2
IPIIPI00455726   IPI00892661   IPI00852876   
Protein Interaction databases
DIP (DOE-UCLA)A6NGQ2
IntAct (EBI)A6NGQ2
BioGRIDOOEP
STRING (EMBL)OOEP
ZODIACOOEP
Ontologies - Pathways
QuickGOA6NGQ2
Ontology : AmiGO###############################################################################################################################################################################################################################################################                      
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                      
NDEx NetworkOOEP
Atlas of Cancer Signalling NetworkOOEP
Wikipedia pathwaysOOEP
Orthology - Evolution
OrthoDB441161
Phylogenetic Trees/Animal Genes : TreeFamOOEP
HOVERGENA6NGQ2
HOGENOMA6NGQ2
Homologs : HomoloGeneOOEP
Homology/Alignments : Family Browser (UCSC)OOEP
Gene fusions - Rearrangements
Fusion: TCGA_MDACCKHDC1 OOEP
Fusion: TCGA_MDACCSENP6 OOEP
Fusion PortalKHDC1 OOEP
Fusion PortalSENP6 OOEP
Fusion : QuiverOOEP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOOEP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OOEP
dbVarOOEP
ClinVarOOEP
1000_GenomesOOEP 
Exome Variant ServerOOEP
Genetic variants : HAPMAP441161
Genomic Variants (DGV)OOEP [DGVbeta]
DECIPHEROOEP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOOEP 
Mutations
ICGC Data PortalOOEP 
TCGA Data PortalOOEP 
Broad Tumor PortalOOEP
OASIS PortalOOEP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOOEP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOOEP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OOEP
DgiDB (Drug Gene Interaction Database)OOEP
DoCM (Curated mutations)OOEP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OOEP (select a term)
intoGenOOEP
Cancer3DOOEP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611689   
Orphanet
DisGeNETOOEP
MedgenOOEP
Genetic Testing Registry OOEP
NextProtA6NGQ2 [Medical]
TSGene441161
GENETestsOOEP
Target ValidationOOEP
Huge Navigator OOEP [HugePedia]
snp3D : Map Gene to Disease441161
BioCentury BCIQOOEP
ClinGenOOEP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441161
Chemical/Pharm GKB GenePA162398414
Clinical trialOOEP
Miscellaneous
canSAR (ICR)OOEP (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOOEP
EVEXOOEP
GoPubMedOOEP
iHOPOOEP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:45:18 CET 2018

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