Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

OOSP1 (oocyte secreted protein 1, pseudogene)

Identity

Alias_namesoocyte secreted protein 1
Other alias-
HGNC (Hugo) OOSP1
LocusID (NCBI) 255649
Atlas_Id 71122
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 59710352 and ends at 59763318 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OOSP1   49233
Cards
Entrez_Gene (NCBI)OOSP1  255649  oocyte secreted protein 1, pseudogene
Aliases
GeneCards (Weizmann)OOSP1
Ensembl hg19 (Hinxton)ENSG00000214788 [Gene_View]  chr11:59710352-59763318 [Contig_View]  OOSP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000214788 [Gene_View]  chr11:59710352-59763318 [Contig_View]  OOSP1 [Vega]
ICGC DataPortalENSG00000214788
TCGA cBioPortalOOSP1
AceView (NCBI)OOSP1
Genatlas (Paris)OOSP1
WikiGenes255649
SOURCE (Princeton)OOSP1
Genetics Home Reference (NIH)OOSP1
Genomic and cartography
GoldenPath hg19 (UCSC)OOSP1  -     chr11:59710352-59763318 +  11q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OOSP1  -     11q12.1   [Description]    (hg38-Dec_2013)
EnsemblOOSP1 - 11q12.1 [CytoView hg19]  OOSP1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOOSP1 [Mapview hg19]  OOSP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB231701 AB231702
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_167190 NW_004929380
Consensus coding sequences : CCDS (NCBI)OOSP1
Cluster EST : UnigeneHs.722773 [ NCBI ]
CGAP (NCI)Hs.722773
Alternative Splicing GalleryENSG00000214788
Gene ExpressionOOSP1 [ NCBI-GEO ]   OOSP1 [ EBI - ARRAY_EXPRESS ]   OOSP1 [ SEEK ]   OOSP1 [ MEM ]
Gene Expression Viewer (FireBrowse)OOSP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255649
GTEX Portal (Tissue expression)OOSP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MZH6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MZH6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MZH6
Splice isoforms : SwissVarA8MZH6
PhosPhoSitePlusA8MZH6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OOSP1
DMDM Disease mutations255649
Blocks (Seattle)OOSP1
SuperfamilyA8MZH6
Human Protein AtlasENSG00000214788
Peptide AtlasA8MZH6
IPIIPI00787775   
Protein Interaction databases
DIP (DOE-UCLA)A8MZH6
IntAct (EBI)A8MZH6
FunCoupENSG00000214788
BioGRIDOOSP1
STRING (EMBL)OOSP1
ZODIACOOSP1
Ontologies - Pathways
QuickGOA8MZH6
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkOOSP1
Atlas of Cancer Signalling NetworkOOSP1
Wikipedia pathwaysOOSP1
Orthology - Evolution
OrthoDB255649
GeneTree (enSembl)ENSG00000214788
Phylogenetic Trees/Animal Genes : TreeFamOOSP1
HOVERGENA8MZH6
HOGENOMA8MZH6
Homologs : HomoloGeneOOSP1
Homology/Alignments : Family Browser (UCSC)OOSP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOOSP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OOSP1
dbVarOOSP1
ClinVarOOSP1
1000_GenomesOOSP1 
Exome Variant ServerOOSP1
ExAC (Exome Aggregation Consortium)OOSP1 (select the gene name)
Genetic variants : HAPMAP255649
Genomic Variants (DGV)OOSP1 [DGVbeta]
DECIPHER (Syndromes)11:59710352-59763318  ENSG00000214788
CONAN: Copy Number AnalysisOOSP1 
Mutations
ICGC Data PortalOOSP1 
TCGA Data PortalOOSP1 
Broad Tumor PortalOOSP1
OASIS PortalOOSP1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOOSP1
BioMutasearch OOSP1
DgiDB (Drug Gene Interaction Database)OOSP1
DoCM (Curated mutations)OOSP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OOSP1 (select a term)
intoGenOOSP1
Cancer3DOOSP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOOSP1
Genetic Testing Registry OOSP1
NextProtA8MZH6 [Medical]
TSGene255649
GENETestsOOSP1
Huge Navigator OOSP1 [HugePedia]
snp3D : Map Gene to Disease255649
BioCentury BCIQOOSP1
ClinGenOOSP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD255649
Clinical trialOOSP1
Miscellaneous
canSAR (ICR)OOSP1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOOSP1
EVEXOOSP1
GoPubMedOOSP1
iHOPOOSP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:35:52 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.