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OOSP2 (oocyte secreted protein 2)

Identity

Alias_namesTMEM122
PLAC1L
transmembrane protein 122
placenta-specific 1-like
Alias_symbol (synonym)FLJ36198
Other alias
HGNC (Hugo) OOSP2
LocusID (NCBI) 219990
Atlas_Id 71123
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 60040275 and ends at 60048043 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OOSP2   26699
Cards
Entrez_Gene (NCBI)OOSP2  219990  oocyte secreted protein 2
AliasesPLAC1L; TMEM122
GeneCards (Weizmann)OOSP2
Ensembl hg19 (Hinxton)ENSG00000149507 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149507 [Gene_View]  chr11:60040275-60048043 [Contig_View]  OOSP2 [Vega]
ICGC DataPortalENSG00000149507
TCGA cBioPortalOOSP2
AceView (NCBI)OOSP2
Genatlas (Paris)OOSP2
WikiGenes219990
SOURCE (Princeton)OOSP2
Genetics Home Reference (NIH)OOSP2
Genomic and cartography
GoldenPath hg38 (UCSC)OOSP2  -     chr11:60040275-60048043 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OOSP2  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblOOSP2 - 11q12.1 [CytoView hg19]  OOSP2 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIOOSP2 [Mapview hg19]  OOSP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093517 BC036256 BC048121 HM005455
RefSeq transcript (Entrez)NM_173801
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OOSP2
Cluster EST : UnigeneHs.132310 [ NCBI ]
CGAP (NCI)Hs.132310
Alternative Splicing GalleryENSG00000149507
Gene ExpressionOOSP2 [ NCBI-GEO ]   OOSP2 [ EBI - ARRAY_EXPRESS ]   OOSP2 [ SEEK ]   OOSP2 [ MEM ]
Gene Expression Viewer (FireBrowse)OOSP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219990
GTEX Portal (Tissue expression)OOSP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86WS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86WS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86WS3
Splice isoforms : SwissVarQ86WS3
PhosPhoSitePlusQ86WS3
Domains : Interpro (EBI)Oosp2    PLAC1_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OOSP2
DMDM Disease mutations219990
Blocks (Seattle)OOSP2
SuperfamilyQ86WS3
Human Protein AtlasENSG00000149507
Peptide AtlasQ86WS3
HPRD08207
IPIIPI00167815   IPI00977648   
Protein Interaction databases
DIP (DOE-UCLA)Q86WS3
IntAct (EBI)Q86WS3
FunCoupENSG00000149507
BioGRIDOOSP2
STRING (EMBL)OOSP2
ZODIACOOSP2
Ontologies - Pathways
QuickGOQ86WS3
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkOOSP2
Atlas of Cancer Signalling NetworkOOSP2
Wikipedia pathwaysOOSP2
Orthology - Evolution
OrthoDB219990
GeneTree (enSembl)ENSG00000149507
Phylogenetic Trees/Animal Genes : TreeFamOOSP2
HOVERGENQ86WS3
HOGENOMQ86WS3
Homologs : HomoloGeneOOSP2
Homology/Alignments : Family Browser (UCSC)OOSP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOOSP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OOSP2
dbVarOOSP2
ClinVarOOSP2
1000_GenomesOOSP2 
Exome Variant ServerOOSP2
ExAC (Exome Aggregation Consortium)OOSP2 (select the gene name)
Genetic variants : HAPMAP219990
Genomic Variants (DGV)OOSP2 [DGVbeta]
DECIPHEROOSP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOOSP2 
Mutations
ICGC Data PortalOOSP2 
TCGA Data PortalOOSP2 
Broad Tumor PortalOOSP2
OASIS PortalOOSP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOOSP2
BioMutasearch OOSP2
DgiDB (Drug Gene Interaction Database)OOSP2
DoCM (Curated mutations)OOSP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OOSP2 (select a term)
intoGenOOSP2
Cancer3DOOSP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOOSP2
Genetic Testing Registry OOSP2
NextProtQ86WS3 [Medical]
TSGene219990
GENETestsOOSP2
Target ValidationOOSP2
Huge Navigator OOSP2 [HugePedia]
snp3D : Map Gene to Disease219990
BioCentury BCIQOOSP2
ClinGenOOSP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219990
Chemical/Pharm GKB GenePA162399666
Clinical trialOOSP2
Miscellaneous
canSAR (ICR)OOSP2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOOSP2
EVEXOOSP2
GoPubMedOOSP2
iHOPOOSP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:33:35 CEST 2017

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