Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OPA1-AS1 (OPA1 antisense RNA 1)

Identity

Alias_namesOPA1 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) OPA1-AS1
LocusID (NCBI) 100873941
Atlas_Id 71124
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 193336388 and ends at 193345121 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OPA1-AS1   40421
Cards
Entrez_Gene (NCBI)OPA1-AS1  100873941  OPA1 antisense RNA 1
Aliases
GeneCards (Weizmann)OPA1-AS1
Ensembl hg19 (Hinxton)ENSG00000224855 [Gene_View]  chr3:193336388-193345121 [Contig_View]  OPA1-AS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000224855 [Gene_View]  chr3:193336388-193345121 [Contig_View]  OPA1-AS1 [Vega]
ICGC DataPortalENSG00000224855
TCGA cBioPortalOPA1-AS1
AceView (NCBI)OPA1-AS1
Genatlas (Paris)OPA1-AS1
WikiGenes100873941
SOURCE (Princeton)OPA1-AS1
Genetics Home Reference (NIH)OPA1-AS1
Genomic and cartography
GoldenPath hg19 (UCSC)OPA1-AS1  -     chr3:193336388-193345121 -  3q29   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OPA1-AS1  -     3q29   [Description]    (hg38-Dec_2013)
EnsemblOPA1-AS1 - 3q29 [CytoView hg19]  OPA1-AS1 - 3q29 [CytoView hg38]
Mapping of homologs : NCBIOPA1-AS1 [Mapview hg19]  OPA1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG203156 BG204670 HG496506 HG496507
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)OPA1-AS1
Cluster EST : UnigeneHs.679364 [ NCBI ]
CGAP (NCI)Hs.679364
Alternative Splicing GalleryENSG00000224855
Gene ExpressionOPA1-AS1 [ NCBI-GEO ]   OPA1-AS1 [ EBI - ARRAY_EXPRESS ]   OPA1-AS1 [ SEEK ]   OPA1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)OPA1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100873941
GTEX Portal (Tissue expression)OPA1-AS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OPA1-AS1
DMDM Disease mutations100873941
Blocks (Seattle)OPA1-AS1
Human Protein AtlasENSG00000224855
Protein Interaction databases
FunCoupENSG00000224855
BioGRIDOPA1-AS1
STRING (EMBL)OPA1-AS1
ZODIACOPA1-AS1
Ontologies - Pathways
Huge Navigator OPA1-AS1 [HugePedia]
snp3D : Map Gene to Disease100873941
BioCentury BCIQOPA1-AS1
ClinGenOPA1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100873941
Clinical trialOPA1-AS1
Miscellaneous
canSAR (ICR)OPA1-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOPA1-AS1
EVEXOPA1-AS1
GoPubMedOPA1-AS1
iHOPOPA1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:53 CET 2017

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