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OPALIN (oligodendrocytic myelin paranodal and inner loop protein)

Identity

Alias (NCBI)HTMP10
TMEM10
TMP10
HGNC (Hugo) OPALIN
HGNC Alias symbTMP10
HTMP10
HGNC Previous nameTMEM10
HGNC Previous nametransmembrane protein 10
LocusID (NCBI) 93377
Atlas_Id 71126
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 96343221 and ends at 96359002 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)OPALIN   20707
Cards
Entrez_Gene (NCBI)OPALIN    oligodendrocytic myelin paranodal and inner loop protein
AliasesHTMP10; TMEM10; TMP10
GeneCards (Weizmann)OPALIN
Ensembl hg19 (Hinxton)ENSG00000197430 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197430 [Gene_View]  ENSG00000197430 [Sequence]  chr10:96343221-96359002 [Contig_View]  OPALIN [Vega]
ICGC DataPortalENSG00000197430
TCGA cBioPortalOPALIN
AceView (NCBI)OPALIN
Genatlas (Paris)OPALIN
SOURCE (Princeton)OPALIN
Genetics Home Reference (NIH)OPALIN
Genomic and cartography
GoldenPath hg38 (UCSC)OPALIN  -     chr10:96343221-96359002 -  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OPALIN  -     10q24.1   [Description]    (hg19-Feb_2009)
GoldenPathOPALIN - 10q24.1 [CytoView hg19]  OPALIN - 10q24.1 [CytoView hg38]
ImmunoBaseENSG00000197430
Genome Data Viewer NCBIOPALIN [Mapview hg19]  
OMIM617200   
Gene and transcription
Genbank (Entrez)AF367761 AK289835 AK296462 AK296562 AK309095
RefSeq transcript (Entrez)NM_001040102 NM_001040103 NM_001284320 NM_001284321 NM_001284322 NM_001284323 NM_001284324 NM_001284326 NM_001284327 NM_033207
Consensus coding sequences : CCDS (NCBI)OPALIN
Gene ExpressionOPALIN [ NCBI-GEO ]   OPALIN [ EBI - ARRAY_EXPRESS ]   OPALIN [ SEEK ]   OPALIN [ MEM ]
Gene Expression Viewer (FireBrowse)OPALIN [ Firebrowse - Broad ]
GenevisibleExpression of OPALIN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93377
GTEX Portal (Tissue expression)OPALIN
Human Protein AtlasENSG00000197430-OPALIN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PE5
PhosPhoSitePlusQ96PE5
Domains : Interpro (EBI)Opalin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OPALIN
SuperfamilyQ96PE5
AlphaFold pdb e-kbQ96PE5   
Human Protein Atlas [tissue]ENSG00000197430-OPALIN [tissue]
HPRD15521
Protein Interaction databases
DIP (DOE-UCLA)Q96PE5
IntAct (EBI)Q96PE5
BioGRIDOPALIN
STRING (EMBL)OPALIN
ZODIACOPALIN
Ontologies - Pathways
QuickGOQ96PE5
Ontology : AmiGOGolgi apparatus  plasma membrane  plasma membrane  integral component of membrane  cell-cell contact zone  regulation of oligodendrocyte differentiation  
Ontology : EGO-EBIGolgi apparatus  plasma membrane  plasma membrane  integral component of membrane  cell-cell contact zone  regulation of oligodendrocyte differentiation  
NDEx NetworkOPALIN
Atlas of Cancer Signalling NetworkOPALIN
Wikipedia pathwaysOPALIN
Orthology - Evolution
OrthoDB93377
GeneTree (enSembl)ENSG00000197430
Phylogenetic Trees/Animal Genes : TreeFamOPALIN
Homologs : HomoloGeneOPALIN
Homology/Alignments : Family Browser (UCSC)OPALIN
Gene fusions - Rearrangements
Fusion : QuiverOPALIN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOPALIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OPALIN
dbVarOPALIN
ClinVarOPALIN
MonarchOPALIN
1000_GenomesOPALIN 
Exome Variant ServerOPALIN
GNOMAD BrowserENSG00000197430
Varsome BrowserOPALIN
ACMGOPALIN variants
VarityQ96PE5
Genomic Variants (DGV)OPALIN [DGVbeta]
DECIPHEROPALIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOPALIN 
Mutations
ICGC Data PortalOPALIN 
TCGA Data PortalOPALIN 
Broad Tumor PortalOPALIN
OASIS PortalOPALIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOPALIN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DOPALIN
Mutations and Diseases : HGMDOPALIN
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaOPALIN
DgiDB (Drug Gene Interaction Database)OPALIN
DoCM (Curated mutations)OPALIN
CIViC (Clinical Interpretations of Variants in Cancer)OPALIN
Cancer3DOPALIN
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617200   
Orphanet
DisGeNETOPALIN
MedgenOPALIN
Genetic Testing Registry OPALIN
NextProtQ96PE5 [Medical]
GENETestsOPALIN
Target ValidationOPALIN
Huge Navigator OPALIN [HugePedia]
ClinGenOPALIN
Clinical trials, drugs, therapy
MyCancerGenomeOPALIN
Protein Interactions : CTDOPALIN
Pharm GKB GenePA162398424
PharosQ96PE5
Clinical trialOPALIN
Miscellaneous
canSAR (ICR)OPALIN
HarmonizomeOPALIN
DataMed IndexOPALIN
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOPALIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:13:36 CEST 2021

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