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OPALIN (oligodendrocytic myelin paranodal and inner loop protein)

Identity

Alias_namesTMEM10
transmembrane protein 10
Alias_symbol (synonym)TMP10
HTMP10
Other alias
HGNC (Hugo) OPALIN
LocusID (NCBI) 93377
Atlas_Id 71126
Location 10q24.1  [Link to chromosome band 10q24]
Location_base_pair Starts at 96343216 and ends at 96359365 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OPALIN   20707
Cards
Entrez_Gene (NCBI)OPALIN  93377  oligodendrocytic myelin paranodal and inner loop protein
AliasesHTMP10; TMEM10; TMP10
GeneCards (Weizmann)OPALIN
Ensembl hg19 (Hinxton)ENSG00000197430 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197430 [Gene_View]  chr10:96343216-96359365 [Contig_View]  OPALIN [Vega]
ICGC DataPortalENSG00000197430
TCGA cBioPortalOPALIN
AceView (NCBI)OPALIN
Genatlas (Paris)OPALIN
WikiGenes93377
SOURCE (Princeton)OPALIN
Genetics Home Reference (NIH)OPALIN
Genomic and cartography
GoldenPath hg38 (UCSC)OPALIN  -     chr10:96343216-96359365 -  10q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OPALIN  -     10q24.1   [Description]    (hg19-Feb_2009)
EnsemblOPALIN - 10q24.1 [CytoView hg19]  OPALIN - 10q24.1 [CytoView hg38]
Mapping of homologs : NCBIOPALIN [Mapview hg19]  OPALIN [Mapview hg38]
OMIM617200   
Gene and transcription
Genbank (Entrez)AF367761 AK289835 AK296462 AK296562 AK309095
RefSeq transcript (Entrez)NM_001040102 NM_001040103 NM_001284320 NM_001284321 NM_001284322 NM_001284323 NM_001284324 NM_001284326 NM_001284327 NM_033207
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OPALIN
Cluster EST : UnigeneHs.12449 [ NCBI ]
CGAP (NCI)Hs.12449
Alternative Splicing GalleryENSG00000197430
Gene ExpressionOPALIN [ NCBI-GEO ]   OPALIN [ EBI - ARRAY_EXPRESS ]   OPALIN [ SEEK ]   OPALIN [ MEM ]
Gene Expression Viewer (FireBrowse)OPALIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93377
GTEX Portal (Tissue expression)OPALIN
Human Protein AtlasENSG00000197430-OPALIN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PE5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PE5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PE5
Splice isoforms : SwissVarQ96PE5
PhosPhoSitePlusQ96PE5
Domains : Interpro (EBI)Opalin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OPALIN
DMDM Disease mutations93377
Blocks (Seattle)OPALIN
SuperfamilyQ96PE5
Human Protein Atlas [tissue]ENSG00000197430-OPALIN [tissue]
Peptide AtlasQ96PE5
HPRD15521
IPIIPI00411486   IPI00942633   IPI00748552   IPI00748568   
Protein Interaction databases
DIP (DOE-UCLA)Q96PE5
IntAct (EBI)Q96PE5
FunCoupENSG00000197430
BioGRIDOPALIN
STRING (EMBL)OPALIN
ZODIACOPALIN
Ontologies - Pathways
QuickGOQ96PE5
Ontology : AmiGOGolgi apparatus  plasma membrane  integral component of membrane  cell-cell contact zone  
Ontology : EGO-EBIGolgi apparatus  plasma membrane  integral component of membrane  cell-cell contact zone  
NDEx NetworkOPALIN
Atlas of Cancer Signalling NetworkOPALIN
Wikipedia pathwaysOPALIN
Orthology - Evolution
OrthoDB93377
GeneTree (enSembl)ENSG00000197430
Phylogenetic Trees/Animal Genes : TreeFamOPALIN
HOVERGENQ96PE5
HOGENOMQ96PE5
Homologs : HomoloGeneOPALIN
Homology/Alignments : Family Browser (UCSC)OPALIN
Gene fusions - Rearrangements
Tumor Fusion PortalOPALIN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOPALIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OPALIN
dbVarOPALIN
ClinVarOPALIN
1000_GenomesOPALIN 
Exome Variant ServerOPALIN
ExAC (Exome Aggregation Consortium)ENSG00000197430
GNOMAD BrowserENSG00000197430
Genetic variants : HAPMAP93377
Genomic Variants (DGV)OPALIN [DGVbeta]
DECIPHEROPALIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOPALIN 
Mutations
ICGC Data PortalOPALIN 
TCGA Data PortalOPALIN 
Broad Tumor PortalOPALIN
OASIS PortalOPALIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOPALIN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOPALIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OPALIN
DgiDB (Drug Gene Interaction Database)OPALIN
DoCM (Curated mutations)OPALIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OPALIN (select a term)
intoGenOPALIN
Cancer3DOPALIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617200   
Orphanet
DisGeNETOPALIN
MedgenOPALIN
Genetic Testing Registry OPALIN
NextProtQ96PE5 [Medical]
TSGene93377
GENETestsOPALIN
Target ValidationOPALIN
Huge Navigator OPALIN [HugePedia]
snp3D : Map Gene to Disease93377
BioCentury BCIQOPALIN
ClinGenOPALIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93377
Chemical/Pharm GKB GenePA162398424
Clinical trialOPALIN
Miscellaneous
canSAR (ICR)OPALIN (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOPALIN
EVEXOPALIN
GoPubMedOPALIN
iHOPOPALIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:22:19 CET 2017

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