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OPN1MW2 (opsin 1 (cone pigments), medium-wave-sensitive 2)

Identity

Other aliasGOP
HGNC (Hugo) OPN1MW2
LocusID (NCBI) 728458
Atlas_Id 71132
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153448085 and ends at 153461637 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OPN1MW2   26952
Cards
Entrez_Gene (NCBI)OPN1MW2  728458  opsin 1 (cone pigments), medium-wave-sensitive 2
AliasesGOP
GeneCards (Weizmann)OPN1MW2
Ensembl hg19 (Hinxton)ENSG00000166160 [Gene_View]  chrX:153448085-153461637 [Contig_View]  OPN1MW2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166160 [Gene_View]  chrX:153448085-153461637 [Contig_View]  OPN1MW2 [Vega]
ICGC DataPortalENSG00000166160
TCGA cBioPortalOPN1MW2
AceView (NCBI)OPN1MW2
Genatlas (Paris)OPN1MW2
WikiGenes728458
SOURCE (Princeton)OPN1MW2
Genetics Home Reference (NIH)OPN1MW2
Genomic and cartography
GoldenPath hg19 (UCSC)OPN1MW2  -     chrX:153448085-153461637 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OPN1MW2  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblOPN1MW2 - Xq28 [CytoView hg19]  OPN1MW2 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIOPN1MW2 [Mapview hg19]  OPN1MW2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001048181
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011681 NW_004929448
Consensus coding sequences : CCDS (NCBI)OPN1MW2
Cluster EST : UnigeneHs.571751 [ NCBI ]
CGAP (NCI)Hs.571751
Alternative Splicing GalleryENSG00000166160
Gene ExpressionOPN1MW2 [ NCBI-GEO ]   OPN1MW2 [ EBI - ARRAY_EXPRESS ]   OPN1MW2 [ SEEK ]   OPN1MW2 [ MEM ]
Gene Expression Viewer (FireBrowse)OPN1MW2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728458
GTEX Portal (Tissue expression)OPN1MW2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP04001   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP04001  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP04001
Splice isoforms : SwissVarP04001
PhosPhoSitePlusP04001
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Opsin    Opsin_red/grn    Retinal_BS   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OPN1MW2
DMDM Disease mutations728458
Blocks (Seattle)OPN1MW2
PDB (SRS)1KPW   
PDB (PDBSum)1KPW   
PDB (IMB)1KPW   
PDB (RSDB)1KPW   
Structural Biology KnowledgeBase1KPW   
SCOP (Structural Classification of Proteins)1KPW   
CATH (Classification of proteins structures)1KPW   
SuperfamilyP04001
Human Protein AtlasENSG00000166160
Peptide AtlasP04001
Protein Interaction databases
DIP (DOE-UCLA)P04001
IntAct (EBI)P04001
FunCoupENSG00000166160
BioGRIDOPN1MW2
STRING (EMBL)OPN1MW2
ZODIACOPN1MW2
Ontologies - Pathways
QuickGOP04001
Ontology : AmiGOretinoid metabolic process  G-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction, visible light  photoreceptor activity  protein-chromophore linkage  positive regulation of cytokinesis  photoreceptor outer segment membrane  
Ontology : EGO-EBIretinoid metabolic process  G-protein coupled receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction, visible light  photoreceptor activity  protein-chromophore linkage  positive regulation of cytokinesis  photoreceptor outer segment membrane  
NDEx NetworkOPN1MW2
Atlas of Cancer Signalling NetworkOPN1MW2
Wikipedia pathwaysOPN1MW2
Orthology - Evolution
OrthoDB728458
GeneTree (enSembl)ENSG00000166160
Phylogenetic Trees/Animal Genes : TreeFamOPN1MW2
HOVERGENP04001
HOGENOMP04001
Homologs : HomoloGeneOPN1MW2
Homology/Alignments : Family Browser (UCSC)OPN1MW2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOPN1MW2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OPN1MW2
dbVarOPN1MW2
ClinVarOPN1MW2
1000_GenomesOPN1MW2 
Exome Variant ServerOPN1MW2
ExAC (Exome Aggregation Consortium)OPN1MW2 (select the gene name)
Genetic variants : HAPMAP728458
Genomic Variants (DGV)OPN1MW2 [DGVbeta]
DECIPHER (Syndromes)X:153448085-153461637  ENSG00000166160
CONAN: Copy Number AnalysisOPN1MW2 
Mutations
ICGC Data PortalOPN1MW2 
TCGA Data PortalOPN1MW2 
Broad Tumor PortalOPN1MW2
OASIS PortalOPN1MW2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOPN1MW2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOPN1MW2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OPN1MW2
DgiDB (Drug Gene Interaction Database)OPN1MW2
DoCM (Curated mutations)OPN1MW2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OPN1MW2 (select a term)
intoGenOPN1MW2
Cancer3DOPN1MW2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOPN1MW2
Genetic Testing Registry OPN1MW2
NextProtP04001 [Medical]
TSGene728458
GENETestsOPN1MW2
Huge Navigator OPN1MW2 [HugePedia]
snp3D : Map Gene to Disease728458
BioCentury BCIQOPN1MW2
ClinGenOPN1MW2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728458
Chemical/Pharm GKB GenePA142671229
Clinical trialOPN1MW2
Miscellaneous
canSAR (ICR)OPN1MW2 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOPN1MW2
EVEXOPN1MW2
GoPubMedOPN1MW2
iHOPOPN1MW2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:54 CET 2017

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