Atlas of Genetics and Cytogenetics in Oncology and Haematology


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OPN1MW3 (opsin 1 (cone pigments), medium-wave-sensitive 3)

Identity

Other aliasGOP
HGNC (Hugo) OPN1MW3
LocusID (NCBI) 101060233
Atlas_Id 78605
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 153448107 and ends at 153461637 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)OPN1MW3   51831
Cards
Entrez_Gene (NCBI)OPN1MW3  101060233  opsin 1 (cone pigments), medium-wave-sensitive 3
AliasesGOP
GeneCards (Weizmann)OPN1MW3
Ensembl hg19 (Hinxton) [Gene_View]  chrX:153448107-153461637 [Contig_View]  OPN1MW3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:153448107-153461637 [Contig_View]  OPN1MW3 [Vega]
TCGA cBioPortalOPN1MW3
AceView (NCBI)OPN1MW3
Genatlas (Paris)OPN1MW3
WikiGenes101060233
SOURCE (Princeton)OPN1MW3
Genetics Home Reference (NIH)OPN1MW3
Genomic and cartography
GoldenPath hg19 (UCSC)OPN1MW3  -     chrX:153448107-153461637 +  Xq28   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OPN1MW3  -     Xq28   [Description]    (hg38-Dec_2013)
EnsemblOPN1MW3 - Xq28 [CytoView hg19]  OPN1MW3 - Xq28 [CytoView hg38]
Mapping of homologs : NCBIOPN1MW3 [Mapview hg19]  OPN1MW3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001330067
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OPN1MW3
Gene ExpressionOPN1MW3 [ NCBI-GEO ]   OPN1MW3 [ EBI - ARRAY_EXPRESS ]   OPN1MW3 [ SEEK ]   OPN1MW3 [ MEM ]
Gene Expression Viewer (FireBrowse)OPN1MW3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101060233
GTEX Portal (Tissue expression)OPN1MW3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN78
Splice isoforms : SwissVarP0DN78
PhosPhoSitePlusP0DN78
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Opsin    Opsin_red/grn    Retinal_BS   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Domain families : Smart (EMBL)7TM_GPCR_Srsx (SM01381)  
Conserved Domain (NCBI)OPN1MW3
DMDM Disease mutations101060233
Blocks (Seattle)OPN1MW3
SuperfamilyP0DN78
Peptide AtlasP0DN78
Protein Interaction databases
DIP (DOE-UCLA)P0DN78
IntAct (EBI)P0DN78
BioGRIDOPN1MW3
STRING (EMBL)OPN1MW3
ZODIACOPN1MW3
Ontologies - Pathways
QuickGOP0DN78
Ontology : AmiGOG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  integral component of membrane  protein-chromophore linkage  
Ontology : EGO-EBIG-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  integral component of membrane  protein-chromophore linkage  
NDEx NetworkOPN1MW3
Atlas of Cancer Signalling NetworkOPN1MW3
Wikipedia pathwaysOPN1MW3
Orthology - Evolution
OrthoDB101060233
Phylogenetic Trees/Animal Genes : TreeFamOPN1MW3
HOVERGENP0DN78
HOGENOMP0DN78
Homologs : HomoloGeneOPN1MW3
Homology/Alignments : Family Browser (UCSC)OPN1MW3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOPN1MW3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OPN1MW3
dbVarOPN1MW3
ClinVarOPN1MW3
1000_GenomesOPN1MW3 
Exome Variant ServerOPN1MW3
ExAC (Exome Aggregation Consortium)OPN1MW3 (select the gene name)
Genetic variants : HAPMAP101060233
Genomic Variants (DGV)OPN1MW3 [DGVbeta]
DECIPHER (Syndromes)X:153448107-153461637  
CONAN: Copy Number AnalysisOPN1MW3 
Mutations
ICGC Data PortalOPN1MW3 
TCGA Data PortalOPN1MW3 
Broad Tumor PortalOPN1MW3
OASIS PortalOPN1MW3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOPN1MW3
BioMutasearch OPN1MW3
DgiDB (Drug Gene Interaction Database)OPN1MW3
DoCM (Curated mutations)OPN1MW3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OPN1MW3 (select a term)
intoGenOPN1MW3
Cancer3DOPN1MW3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOPN1MW3
Genetic Testing Registry OPN1MW3
NextProtP0DN78 [Medical]
TSGene101060233
GENETestsOPN1MW3
Huge Navigator OPN1MW3 [HugePedia]
snp3D : Map Gene to Disease101060233
BioCentury BCIQOPN1MW3
ClinGenOPN1MW3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060233
Clinical trialOPN1MW3
Miscellaneous
canSAR (ICR)OPN1MW3 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineOPN1MW3
EVEXOPN1MW3
GoPubMedOPN1MW3
iHOPOPN1MW3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:54 CET 2017

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