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OPN1SW (opsin 1, short wave sensitive)

Identity

Alias_namesBCP
blue cone photoreceptor pigment
Alias_symbol (synonym)BOP
CBT
Other alias
HGNC (Hugo) OPN1SW
LocusID (NCBI) 611
Atlas_Id 71133
Location 7q32.1  [Link to chromosome band 7q32]
Location_base_pair Starts at 128772489 and ends at 128775790 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OPN1SW   1012
Cards
Entrez_Gene (NCBI)OPN1SW  611  opsin 1, short wave sensitive
AliasesBCP; BOP; CBT
GeneCards (Weizmann)OPN1SW
Ensembl hg19 (Hinxton)ENSG00000128617 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128617 [Gene_View]  chr7:128772489-128775790 [Contig_View]  OPN1SW [Vega]
ICGC DataPortalENSG00000128617
TCGA cBioPortalOPN1SW
AceView (NCBI)OPN1SW
Genatlas (Paris)OPN1SW
WikiGenes611
SOURCE (Princeton)OPN1SW
Genetics Home Reference (NIH)OPN1SW
Genomic and cartography
GoldenPath hg38 (UCSC)OPN1SW  -     chr7:128772489-128775790 -  7q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OPN1SW  -     7q32.1   [Description]    (hg19-Feb_2009)
EnsemblOPN1SW - 7q32.1 [CytoView hg19]  OPN1SW - 7q32.1 [CytoView hg38]
Mapping of homologs : NCBIOPN1SW [Mapview hg19]  OPN1SW [Mapview hg38]
OMIM190900   613522   
Gene and transcription
Genbank (Entrez)BC156719 BM666330 DQ822478 M26172
RefSeq transcript (Entrez)NM_001708
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OPN1SW
Cluster EST : UnigeneHs.656404 [ NCBI ]
CGAP (NCI)Hs.656404
Alternative Splicing GalleryENSG00000128617
Gene ExpressionOPN1SW [ NCBI-GEO ]   OPN1SW [ EBI - ARRAY_EXPRESS ]   OPN1SW [ SEEK ]   OPN1SW [ MEM ]
Gene Expression Viewer (FireBrowse)OPN1SW [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)611
GTEX Portal (Tissue expression)OPN1SW
Protein : pattern, domain, 3D structure
UniProt/SwissProtP03999   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP03999  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP03999
Splice isoforms : SwissVarP03999
PhosPhoSitePlusP03999
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Opsin    Opsin_blue    Retinal_BS   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OPN1SW
DMDM Disease mutations611
Blocks (Seattle)OPN1SW
PDB (SRS)1KPN   
PDB (PDBSum)1KPN   
PDB (IMB)1KPN   
PDB (RSDB)1KPN   
Structural Biology KnowledgeBase1KPN   
SCOP (Structural Classification of Proteins)1KPN   
CATH (Classification of proteins structures)1KPN   
SuperfamilyP03999
Human Protein AtlasENSG00000128617
Peptide AtlasP03999
HPRD01836
IPIIPI00008604   
Protein Interaction databases
DIP (DOE-UCLA)P03999
IntAct (EBI)P03999
FunCoupENSG00000128617
BioGRIDOPN1SW
STRING (EMBL)OPN1SW
ZODIACOPN1SW
Ontologies - Pathways
QuickGOP03999
Ontology : AmiGOretinoid metabolic process  photoreceptor outer segment  receptor activity  G-protein coupled receptor activity  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  photoreceptor outer segment membrane  
Ontology : EGO-EBIretinoid metabolic process  photoreceptor outer segment  receptor activity  G-protein coupled receptor activity  integral component of plasma membrane  signal transduction  G-protein coupled receptor signaling pathway  visual perception  phototransduction  photoreceptor activity  protein-chromophore linkage  photoreceptor outer segment membrane  
NDEx NetworkOPN1SW
Atlas of Cancer Signalling NetworkOPN1SW
Wikipedia pathwaysOPN1SW
Orthology - Evolution
OrthoDB611
GeneTree (enSembl)ENSG00000128617
Phylogenetic Trees/Animal Genes : TreeFamOPN1SW
HOVERGENP03999
HOGENOMP03999
Homologs : HomoloGeneOPN1SW
Homology/Alignments : Family Browser (UCSC)OPN1SW
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOPN1SW [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OPN1SW
dbVarOPN1SW
ClinVarOPN1SW
1000_GenomesOPN1SW 
Exome Variant ServerOPN1SW
ExAC (Exome Aggregation Consortium)OPN1SW (select the gene name)
Genetic variants : HAPMAP611
Genomic Variants (DGV)OPN1SW [DGVbeta]
DECIPHEROPN1SW [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOPN1SW 
Mutations
ICGC Data PortalOPN1SW 
TCGA Data PortalOPN1SW 
Broad Tumor PortalOPN1SW
OASIS PortalOPN1SW [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOPN1SW  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOPN1SW
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch OPN1SW
DgiDB (Drug Gene Interaction Database)OPN1SW
DoCM (Curated mutations)OPN1SW (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OPN1SW (select a term)
intoGenOPN1SW
Cancer3DOPN1SW(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM190900    613522   
Orphanet11810   
MedgenOPN1SW
Genetic Testing Registry OPN1SW
NextProtP03999 [Medical]
TSGene611
GENETestsOPN1SW
Target ValidationOPN1SW
Huge Navigator OPN1SW [HugePedia]
snp3D : Map Gene to Disease611
BioCentury BCIQOPN1SW
ClinGenOPN1SW
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD611
Chemical/Pharm GKB GenePA31938
Clinical trialOPN1SW
Miscellaneous
canSAR (ICR)OPN1SW (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOPN1SW
EVEXOPN1SW
GoPubMedOPN1SW
iHOPOPN1SW
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:32:41 CEST 2017

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