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OPN3 (opsin 3)

Identity

Alias_namesECPN
encephalopsin
Alias_symbol (synonym)ERO
NMO-1
encephalopsin
PPP1R116
Other alias
HGNC (Hugo) OPN3
LocusID (NCBI) 23596
Atlas_Id 71134
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 241593150 and ends at 241640399 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OPN3   14007
Cards
Entrez_Gene (NCBI)OPN3  23596  opsin 3
AliasesECPN; PPP1R116
GeneCards (Weizmann)OPN3
Ensembl hg19 (Hinxton)ENSG00000054277 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054277 [Gene_View]  chr1:241593150-241640399 [Contig_View]  OPN3 [Vega]
ICGC DataPortalENSG00000054277
TCGA cBioPortalOPN3
AceView (NCBI)OPN3
Genatlas (Paris)OPN3
WikiGenes23596
SOURCE (Princeton)OPN3
Genetics Home Reference (NIH)OPN3
Genomic and cartography
GoldenPath hg38 (UCSC)OPN3  -     chr1:241593150-241640399 -  1q43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OPN3  -     1q43   [Description]    (hg19-Feb_2009)
EnsemblOPN3 - 1q43 [CytoView hg19]  OPN3 - 1q43 [CytoView hg38]
Mapping of homologs : NCBIOPN3 [Mapview hg19]  OPN3 [Mapview hg38]
OMIM606695   
Gene and transcription
Genbank (Entrez)AF140242 AF303588 AK310307 BC036773 BC051900
RefSeq transcript (Entrez)NM_001030011 NM_001030012 NM_014322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OPN3
Cluster EST : UnigeneHs.409081 [ NCBI ]
CGAP (NCI)Hs.409081
Alternative Splicing GalleryENSG00000054277
Gene ExpressionOPN3 [ NCBI-GEO ]   OPN3 [ EBI - ARRAY_EXPRESS ]   OPN3 [ SEEK ]   OPN3 [ MEM ]
Gene Expression Viewer (FireBrowse)OPN3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23596
GTEX Portal (Tissue expression)OPN3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1Y3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1Y3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1Y3
Splice isoforms : SwissVarQ9H1Y3
PhosPhoSitePlusQ9H1Y3
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)    OPSIN (PS00238)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Retinal_BS   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)OPN3
DMDM Disease mutations23596
Blocks (Seattle)OPN3
SuperfamilyQ9H1Y3
Human Protein AtlasENSG00000054277
Peptide AtlasQ9H1Y3
HPRD05985
IPIIPI00300717   IPI00217348   IPI00430789   IPI00441073   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1Y3
IntAct (EBI)Q9H1Y3
FunCoupENSG00000054277
BioGRIDOPN3
STRING (EMBL)OPN3
ZODIACOPN3
Ontologies - Pathways
QuickGOQ9H1Y3
Ontology : AmiGOphotoreceptor outer segment  G-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  phototransduction  G-protein coupled photoreceptor activity  detection of light stimulus  detection of visible light  photoreceptor activity  integral component of membrane  protein-chromophore linkage  regulation of circadian rhythm  
Ontology : EGO-EBIphotoreceptor outer segment  G-protein coupled receptor activity  integral component of plasma membrane  G-protein coupled receptor signaling pathway  phototransduction  G-protein coupled photoreceptor activity  detection of light stimulus  detection of visible light  photoreceptor activity  integral component of membrane  protein-chromophore linkage  regulation of circadian rhythm  
NDEx NetworkOPN3
Atlas of Cancer Signalling NetworkOPN3
Wikipedia pathwaysOPN3
Orthology - Evolution
OrthoDB23596
GeneTree (enSembl)ENSG00000054277
Phylogenetic Trees/Animal Genes : TreeFamOPN3
HOVERGENQ9H1Y3
HOGENOMQ9H1Y3
Homologs : HomoloGeneOPN3
Homology/Alignments : Family Browser (UCSC)OPN3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOPN3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OPN3
dbVarOPN3
ClinVarOPN3
1000_GenomesOPN3 
Exome Variant ServerOPN3
ExAC (Exome Aggregation Consortium)OPN3 (select the gene name)
Genetic variants : HAPMAP23596
Genomic Variants (DGV)OPN3 [DGVbeta]
DECIPHEROPN3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOPN3 
Mutations
ICGC Data PortalOPN3 
TCGA Data PortalOPN3 
Broad Tumor PortalOPN3
OASIS PortalOPN3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOPN3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOPN3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OPN3
DgiDB (Drug Gene Interaction Database)OPN3
DoCM (Curated mutations)OPN3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OPN3 (select a term)
intoGenOPN3
Cancer3DOPN3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606695   
Orphanet
MedgenOPN3
Genetic Testing Registry OPN3
NextProtQ9H1Y3 [Medical]
TSGene23596
GENETestsOPN3
Huge Navigator OPN3 [HugePedia]
snp3D : Map Gene to Disease23596
BioCentury BCIQOPN3
ClinGenOPN3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23596
Chemical/Pharm GKB GenePA31939
Clinical trialOPN3
Miscellaneous
canSAR (ICR)OPN3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOPN3
EVEXOPN3
GoPubMedOPN3
iHOPOPN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:56 CEST 2017

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