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OPRPN (opiorphin prepropeptide)

Identity

Alias_namesPROL1
proline rich 1
proline rich, lacrimal 1
Alias_symbol (synonym)BPLP
PRL1
Other aliasopiorphin
HGNC (Hugo) OPRPN
LocusID (NCBI) 58503
Atlas_Id 78546
Location 4q13.3  [Link to chromosome band 4q13]
Location_base_pair Starts at 70397882 and ends at 70410197 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OPRPN   17279
Cards
Entrez_Gene (NCBI)OPRPN  58503  opiorphin prepropeptide
AliasesBPLP; PRL1; PROL1; opiorphin
GeneCards (Weizmann)OPRPN
Ensembl hg19 (Hinxton)ENSG00000171199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171199 [Gene_View]  chr4:70397882-70410197 [Contig_View]  OPRPN [Vega]
ICGC DataPortalENSG00000171199
TCGA cBioPortalOPRPN
AceView (NCBI)OPRPN
Genatlas (Paris)OPRPN
WikiGenes58503
SOURCE (Princeton)OPRPN
Genetics Home Reference (NIH)OPRPN
Genomic and cartography
GoldenPath hg38 (UCSC)OPRPN  -     chr4:70397882-70410197 +  4q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OPRPN  -     4q13.3   [Description]    (hg19-Feb_2009)
EnsemblOPRPN - 4q13.3 [CytoView hg19]  OPRPN - 4q13.3 [CytoView hg38]
Mapping of homologs : NCBIOPRPN [Mapview hg19]  OPRPN [Mapview hg38]
OMIM608936   
Gene and transcription
Genbank (Entrez)BC092438 BC141465 BC148720 CD721906 CD722615
RefSeq transcript (Entrez)NM_001302807 NM_021225
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OPRPN
Cluster EST : UnigeneHs.661425 [ NCBI ]
CGAP (NCI)Hs.661425
Alternative Splicing GalleryENSG00000171199
Gene ExpressionOPRPN [ NCBI-GEO ]   OPRPN [ EBI - ARRAY_EXPRESS ]   OPRPN [ SEEK ]   OPRPN [ MEM ]
Gene Expression Viewer (FireBrowse)OPRPN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58503
GTEX Portal (Tissue expression)OPRPN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99935   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99935  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99935
Splice isoforms : SwissVarQ99935
PhosPhoSitePlusQ99935
Domains : Interpro (EBI)SMR-like   
Domain families : Pfam (Sanger)PROL5-SMR (PF15621)   
Domain families : Pfam (NCBI)pfam15621   
Conserved Domain (NCBI)OPRPN
DMDM Disease mutations58503
Blocks (Seattle)OPRPN
SuperfamilyQ99935
Human Protein AtlasENSG00000171199
Peptide AtlasQ99935
HPRD16408
IPIIPI00009682   
Protein Interaction databases
DIP (DOE-UCLA)Q99935
IntAct (EBI)Q99935
FunCoupENSG00000171199
BioGRIDOPRPN
STRING (EMBL)OPRPN
ZODIACOPRPN
Ontologies - Pathways
QuickGOQ99935
Ontology : AmiGOretina homeostasis  endopeptidase inhibitor activity  extracellular region  extracellular space  negative regulation of endopeptidase activity  peptidase inhibitor activity  regulation of sensory perception of pain  
Ontology : EGO-EBIretina homeostasis  endopeptidase inhibitor activity  extracellular region  extracellular space  negative regulation of endopeptidase activity  peptidase inhibitor activity  regulation of sensory perception of pain  
NDEx NetworkOPRPN
Atlas of Cancer Signalling NetworkOPRPN
Wikipedia pathwaysOPRPN
Orthology - Evolution
OrthoDB58503
GeneTree (enSembl)ENSG00000171199
Phylogenetic Trees/Animal Genes : TreeFamOPRPN
HOVERGENQ99935
HOGENOMQ99935
Homologs : HomoloGeneOPRPN
Homology/Alignments : Family Browser (UCSC)OPRPN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOPRPN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OPRPN
dbVarOPRPN
ClinVarOPRPN
1000_GenomesOPRPN 
Exome Variant ServerOPRPN
ExAC (Exome Aggregation Consortium)OPRPN (select the gene name)
Genetic variants : HAPMAP58503
Genomic Variants (DGV)OPRPN [DGVbeta]
DECIPHEROPRPN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOPRPN 
Mutations
ICGC Data PortalOPRPN 
TCGA Data PortalOPRPN 
Broad Tumor PortalOPRPN
OASIS PortalOPRPN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDOPRPN
BioMutasearch OPRPN
DgiDB (Drug Gene Interaction Database)OPRPN
DoCM (Curated mutations)OPRPN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OPRPN (select a term)
intoGenOPRPN
Cancer3DOPRPN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608936   
Orphanet
MedgenOPRPN
Genetic Testing Registry OPRPN
NextProtQ99935 [Medical]
TSGene58503
GENETestsOPRPN
Huge Navigator OPRPN [HugePedia]
snp3D : Map Gene to Disease58503
BioCentury BCIQOPRPN
ClinGenOPRPN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58503
Chemical/Pharm GKB GenePA33803
Clinical trialOPRPN
Miscellaneous
canSAR (ICR)OPRPN (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOPRPN
EVEXOPRPN
GoPubMedOPRPN
iHOPOPRPN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:45:57 CEST 2017

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