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OPTN (optineurin)

Identity

Alias (NCBI)ALS12
FIP2
GLC1E
HIP7
HYPL
NRP
TFIIIA-INTP
HGNC (Hugo) OPTN
HGNC Alias symbFIP2
HYPL
FIP-2
TFIIIA-INTP
NRP
HIP7
HGNC Previous nameGLC1E
HGNC Previous nameglaucoma 1, open angle, E (adult-onset)
LocusID (NCBI) 10133
Atlas_Id 41609
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 13100082 and ends at 13138276 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
OPTN (10p13) / GNS (12q14.3)OPTN (10p13) / HMGN5 (Xq21.1)OPTN (10p13) / OPTN (10p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)OPTN   17142
Cards
Entrez_Gene (NCBI)OPTN    optineurin
AliasesALS12; FIP2; GLC1E; HIP7; 
HYPL; NRP; TFIIIA-INTP
GeneCards (Weizmann)OPTN
Ensembl hg19 (Hinxton)ENSG00000123240 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123240 [Gene_View]  ENSG00000123240 [Sequence]  chr10:13100082-13138276 [Contig_View]  OPTN [Vega]
ICGC DataPortalENSG00000123240
TCGA cBioPortalOPTN
AceView (NCBI)OPTN
Genatlas (Paris)OPTN
SOURCE (Princeton)OPTN
Genetics Home Reference (NIH)OPTN
Genomic and cartography
GoldenPath hg38 (UCSC)OPTN  -     chr10:13100082-13138276 +  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OPTN  -     10p13   [Description]    (hg19-Feb_2009)
GoldenPathOPTN - 10p13 [CytoView hg19]  OPTN - 10p13 [CytoView hg38]
ImmunoBaseENSG00000123240
Genome Data Viewer NCBIOPTN [Mapview hg19]  
OMIM137760   602432   606657   613435   
Gene and transcription
Genbank (Entrez)AF049614 AF061034 AF061034 AF070533 AF420371
RefSeq transcript (Entrez)NM_001008211 NM_001008212 NM_001008213 NM_021980
Consensus coding sequences : CCDS (NCBI)OPTN
Gene ExpressionOPTN [ NCBI-GEO ]   OPTN [ EBI - ARRAY_EXPRESS ]   OPTN [ SEEK ]   OPTN [ MEM ]
Gene Expression Viewer (FireBrowse)OPTN [ Firebrowse - Broad ]
GenevisibleExpression of OPTN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10133
GTEX Portal (Tissue expression)OPTN
Human Protein AtlasENSG00000123240-OPTN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OPTN
Human Protein Atlas [tissue]ENSG00000123240-OPTN [tissue]
HPRD03891
Protein Interaction databases
BioGRIDOPTN
STRING (EMBL)OPTN
ZODIACOPTN
Ontologies - Pathways
Litterature
PubMed243 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXOPTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:23:48 CEST 2021
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