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OR10A3 (olfactory receptor family 10 subfamily A member 3)

Identity

Alias_namesolfactory receptor, family 10, subfamily A, member 3
Alias_symbol (synonym)HTPCRX12
HSHTPCRX12
Other alias
HGNC (Hugo) OR10A3
LocusID (NCBI) 26496
Atlas_Id 71140
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 7938576 and ends at 7939520 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10A3   8162
Cards
Entrez_Gene (NCBI)OR10A3  26496  olfactory receptor family 10 subfamily A member 3
AliasesHSHTPCRX12; HTPCRX12
GeneCards (Weizmann)OR10A3
Ensembl hg19 (Hinxton)ENSG00000170683 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170683 [Gene_View]  chr11:7938576-7939520 [Contig_View]  OR10A3 [Vega]
ICGC DataPortalENSG00000170683
TCGA cBioPortalOR10A3
AceView (NCBI)OR10A3
Genatlas (Paris)OR10A3
WikiGenes26496
SOURCE (Princeton)OR10A3
Genetics Home Reference (NIH)OR10A3
Genomic and cartography
GoldenPath hg38 (UCSC)OR10A3  -     chr11:7938576-7939520 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10A3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR10A3 - 11p15.4 [CytoView hg19]  OR10A3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR10A3 [Mapview hg19]  OR10A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137031 BC137032 X64986
RefSeq transcript (Entrez)NM_001003745
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_187583 NW_011332695
Consensus coding sequences : CCDS (NCBI)OR10A3
Cluster EST : UnigeneHs.381322 [ NCBI ]
CGAP (NCI)Hs.381322
Alternative Splicing GalleryENSG00000170683
Gene ExpressionOR10A3 [ NCBI-GEO ]   OR10A3 [ EBI - ARRAY_EXPRESS ]   OR10A3 [ SEEK ]   OR10A3 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26496
GTEX Portal (Tissue expression)OR10A3
Human Protein AtlasENSG00000170683-OR10A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP58181   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP58181  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP58181
Splice isoforms : SwissVarP58181
PhosPhoSitePlusP58181
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10A3
DMDM Disease mutations26496
Blocks (Seattle)OR10A3
SuperfamilyP58181
Human Protein Atlas [tissue]ENSG00000170683-OR10A3 [tissue]
Peptide AtlasP58181
HPRD14881
IPIIPI00478001   
Protein Interaction databases
DIP (DOE-UCLA)P58181
IntAct (EBI)P58181
FunCoupENSG00000170683
BioGRIDOR10A3
STRING (EMBL)OR10A3
ZODIACOR10A3
Ontologies - Pathways
QuickGOP58181
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10A3
Atlas of Cancer Signalling NetworkOR10A3
Wikipedia pathwaysOR10A3
Orthology - Evolution
OrthoDB26496
GeneTree (enSembl)ENSG00000170683
Phylogenetic Trees/Animal Genes : TreeFamOR10A3
HOVERGENP58181
HOGENOMP58181
Homologs : HomoloGeneOR10A3
Homology/Alignments : Family Browser (UCSC)OR10A3
Gene fusions - Rearrangements
Fusion: Tumor Portal OR10A3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10A3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10A3
dbVarOR10A3
ClinVarOR10A3
1000_GenomesOR10A3 
Exome Variant ServerOR10A3
ExAC (Exome Aggregation Consortium)ENSG00000170683
GNOMAD BrowserENSG00000170683
Genetic variants : HAPMAP26496
Genomic Variants (DGV)OR10A3 [DGVbeta]
DECIPHEROR10A3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10A3 
Mutations
ICGC Data PortalOR10A3 
TCGA Data PortalOR10A3 
Broad Tumor PortalOR10A3
OASIS PortalOR10A3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10A3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10A3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10A3
DgiDB (Drug Gene Interaction Database)OR10A3
DoCM (Curated mutations)OR10A3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10A3 (select a term)
intoGenOR10A3
Cancer3DOR10A3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10A3
Genetic Testing Registry OR10A3
NextProtP58181 [Medical]
TSGene26496
GENETestsOR10A3
Target ValidationOR10A3
Huge Navigator OR10A3 [HugePedia]
snp3D : Map Gene to Disease26496
BioCentury BCIQOR10A3
ClinGenOR10A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26496
Chemical/Pharm GKB GenePA31951
Clinical trialOR10A3
Miscellaneous
canSAR (ICR)OR10A3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10A3
EVEXOR10A3
GoPubMedOR10A3
iHOPOR10A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:19:56 CET 2017

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