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OR10A4 (olfactory receptor family 10 subfamily A member 4)

Identity

Alias_namesOR10A4P
olfactory receptor, family 10, subfamily A, member 4 pseudogene
olfactory receptor, family 10, subfamily A, member 4
Other aliasJCG5
HGNC (Hugo) OR10A4
LocusID (NCBI) 283297
Atlas_Id 71141
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6876625 and ends at 6877619 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10A4   15130
Cards
Entrez_Gene (NCBI)OR10A4  283297  olfactory receptor family 10 subfamily A member 4
AliasesJCG5; OR10A4P
GeneCards (Weizmann)OR10A4
Ensembl hg19 (Hinxton)ENSG00000170782 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170782 [Gene_View]  chr11:6876625-6877619 [Contig_View]  OR10A4 [Vega]
ICGC DataPortalENSG00000170782
TCGA cBioPortalOR10A4
AceView (NCBI)OR10A4
Genatlas (Paris)OR10A4
WikiGenes283297
SOURCE (Princeton)OR10A4
Genetics Home Reference (NIH)OR10A4
Genomic and cartography
GoldenPath hg38 (UCSC)OR10A4  -     chr11:6876625-6877619 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)OR10A4  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblOR10A4 - 11p15.4 [CytoView hg19]  OR10A4 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR10A4 [Mapview hg19]  OR10A4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF209506 BC137024 BC137027
RefSeq transcript (Entrez)NM_207186
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)OR10A4
Cluster EST : UnigeneHs.448685 [ NCBI ]
CGAP (NCI)Hs.448685
Alternative Splicing GalleryENSG00000170782
Gene ExpressionOR10A4 [ NCBI-GEO ]   OR10A4 [ EBI - ARRAY_EXPRESS ]   OR10A4 [ SEEK ]   OR10A4 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10A4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [dissums  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283297
GTEX Portal (Tissue expression)OR10A4
Human Protein AtlasENSG00000170782-OR10A4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H209   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H209  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H209
Splice isoforms : SwissVarQ9H209
PhosPhoSitePlusQ9H209
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10A4
DMDM Disease mutations283297
Blocks (Seattle)OR10A4
SuperfamilyQ9H209
Human Protein Atlas [tissue]ENSG00000170782-OR10A4 [tissue]
Peptide AtlasQ9H209
HPRD17664
IPIIPI00742745   
Protein Interaction databases
DIP (DOE-UCLA)Q9H209
IntAct (EBI)Q9H209
FunCoupENSG00000170782
BioGRIDOR10A4
STRING (EMBL)OR10A4
ZODIACOR10A4
Ontologies - Pathways
QuickGOQ9H209
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  axon guidance  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  axon guidance  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10A4
Atlas of Cancer Signalling NetworkOR10A4
Wikipedia pathwaysOR10A4
Orthology - Evolution
OrthoDB283297
GeneTree (enSembl)ENSG00000170782
Phylogenetic Trees/Animal Genes : TreeFamOR10A4
HOVERGENQ9H209
HOGENOMQ9H209
Homologs : HomoloGeneOR10A4
Homology/Alignments : Family Browser (UCSC)OR10A4
Gene fusions - Rearrangements
Tumor Fusion PortalOR10A4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10A4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10A4
dbVarOR10A4
ClinVarOR10A4
1000_GenomesOR10A4 
Exome Variant ServerOR10A4
ExAC (Exome Aggregation Consortium)ENSG00000170782
GNOMAD BrowserENSG00000170782
Genetic variants : HAPMAP283297
Genomic Variants (DGV)OR10A4 [DGVbeta]
DECIPHEROR10A4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisOR10A4 
Mutations
ICGC Data PortalOR10A4 
TCGA Data PortalOR10A4 
Broad Tumor PortalOR10A4
OASIS PortalOR10A4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10A4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10A4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10A4
DgiDB (Drug Gene Interaction Database)OR10A4
DoCM (Curated mutations)OR10A4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10A4 (select a term)
intoGenOR10A4
Cancer3DOR10A4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETOR10A4
MedgenOR10A4
Genetic Testing Registry OR10A4
NextProtQ9H209 [Medical]
TSGene283297
GENETestsOR10A4
Target ValidationOR10A4
Huge Navigator OR10A4 [HugePedia]
snp3D : Map Gene to Disease283297
BioCentury BCIQOR10A4
ClinGenOR10A4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283297
Chemical/Pharm GKB GenePA31952
Clinical trialOR10A4
Miscellaneous
canSAR (ICR)OR10A4 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10A4
EVEXOR10A4
GoPubMedOR10A4
iHOPOR10A4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:24:20 CET 2017

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