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OR10A6 (olfactory receptor, family 10, subfamily A, member 6 (gene/pseudogene))

Identity

Alias_namesolfactory receptor, family 10, subfamily A, member 6 (gene/pseudogene)
Other aliasOR11-96
HGNC (Hugo) OR10A6
LocusID (NCBI) 390093
Atlas_Id 71143
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 7949265 and ends at 7950209 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)OR10A6   15132
Cards
Entrez_Gene (NCBI)OR10A6  390093  olfactory receptor, family 10, subfamily A, member 6 (gene/pseudogene)
AliasesOR11-96
GeneCards (Weizmann)OR10A6
Ensembl hg19 (Hinxton)ENSG00000175393 [Gene_View]  chr11:7949265-7950209 [Contig_View]  OR10A6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175393 [Gene_View]  chr11:7949265-7950209 [Contig_View]  OR10A6 [Vega]
ICGC DataPortalENSG00000175393
TCGA cBioPortalOR10A6
AceView (NCBI)OR10A6
Genatlas (Paris)OR10A6
WikiGenes390093
SOURCE (Princeton)OR10A6
Genetics Home Reference (NIH)OR10A6
Genomic and cartography
GoldenPath hg19 (UCSC)OR10A6  -     chr11:7949265-7950209 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)OR10A6  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblOR10A6 - 11p15.4 [CytoView hg19]  OR10A6 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIOR10A6 [Mapview hg19]  OR10A6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC156508
RefSeq transcript (Entrez)NM_001004461
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NT_187583 NW_004929378 NW_011332695
Consensus coding sequences : CCDS (NCBI)OR10A6
Cluster EST : UnigeneHs.528593 [ NCBI ]
CGAP (NCI)Hs.528593
Alternative Splicing GalleryENSG00000175393
Gene ExpressionOR10A6 [ NCBI-GEO ]   OR10A6 [ EBI - ARRAY_EXPRESS ]   OR10A6 [ SEEK ]   OR10A6 [ MEM ]
Gene Expression Viewer (FireBrowse)OR10A6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390093
GTEX Portal (Tissue expression)OR10A6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NH74   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NH74  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NH74
Splice isoforms : SwissVarQ8NH74
PhosPhoSitePlusQ8NH74
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    Olfact_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)OR10A6
DMDM Disease mutations390093
Blocks (Seattle)OR10A6
SuperfamilyQ8NH74
Human Protein AtlasENSG00000175393
Peptide AtlasQ8NH74
HPRD14882
IPIIPI00169190   IPI00386366   
Protein Interaction databases
DIP (DOE-UCLA)Q8NH74
IntAct (EBI)Q8NH74
FunCoupENSG00000175393
BioGRIDOR10A6
STRING (EMBL)OR10A6
ZODIACOR10A6
Ontologies - Pathways
QuickGOQ8NH74
Ontology : AmiGOG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Ontology : EGO-EBIG-protein coupled receptor activity  olfactory receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  sensory perception of smell  integral component of membrane  detection of chemical stimulus involved in sensory perception of smell  detection of chemical stimulus involved in sensory perception of smell  
Pathways : KEGGOlfactory transduction   
NDEx NetworkOR10A6
Atlas of Cancer Signalling NetworkOR10A6
Wikipedia pathwaysOR10A6
Orthology - Evolution
OrthoDB390093
GeneTree (enSembl)ENSG00000175393
Phylogenetic Trees/Animal Genes : TreeFamOR10A6
HOVERGENQ8NH74
HOGENOMQ8NH74
Homologs : HomoloGeneOR10A6
Homology/Alignments : Family Browser (UCSC)OR10A6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerOR10A6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)OR10A6
dbVarOR10A6
ClinVarOR10A6
1000_GenomesOR10A6 
Exome Variant ServerOR10A6
ExAC (Exome Aggregation Consortium)OR10A6 (select the gene name)
Genetic variants : HAPMAP390093
Genomic Variants (DGV)OR10A6 [DGVbeta]
DECIPHER (Syndromes)11:7949265-7950209  ENSG00000175393
CONAN: Copy Number AnalysisOR10A6 
Mutations
ICGC Data PortalOR10A6 
TCGA Data PortalOR10A6 
Broad Tumor PortalOR10A6
OASIS PortalOR10A6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICOR10A6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDOR10A6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch OR10A6
DgiDB (Drug Gene Interaction Database)OR10A6
DoCM (Curated mutations)OR10A6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)OR10A6 (select a term)
intoGenOR10A6
Cancer3DOR10A6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenOR10A6
Genetic Testing Registry OR10A6
NextProtQ8NH74 [Medical]
TSGene390093
GENETestsOR10A6
Huge Navigator OR10A6 [HugePedia]
snp3D : Map Gene to Disease390093
BioCentury BCIQOR10A6
ClinGenOR10A6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390093
Chemical/Pharm GKB GenePA31954
Clinical trialOR10A6
Miscellaneous
canSAR (ICR)OR10A6 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineOR10A6
EVEXOR10A6
GoPubMedOR10A6
iHOPOR10A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:35:57 CET 2017

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